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. 2019 May 28;68(7):996–1002. doi: 10.1099/jmm.0.000968

Table 3.

Organisms detected by SMS in culture-negative samples from patients with PMN values greater than 80 %

SMS identified putative pathogena

Percentage of mapped reads assigned to the SMS ID (%)

Staphylococcus aureus

0.0032

Klebsiella oxytoca

0.0042

Staphylococcus aureus

0.0065

Staphylococcus aureus

0.0205

Streptococcus pneumoniae

0.1015

Staphylococcus aureus

0.1253

Streptococcus pneumoniae

0.1385

Burkholderia pyrrocinia

0.1504

Acinetobacter baumannii

0.1923

Staphylococcus aureus

0.5727

Klebsiella oxytoca

0.9313

Streptococcus pneumoniae

0.9448

Burkholderia pyrrocinia

2.4522

Haemophilus influenzae

9.9639

Human herpesvirus 1

95.3523

a, species of highest abundance.