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. 2019 Dec 10;5(12):e000302. doi: 10.1099/mgen.0.000302

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© 2019 The Authors

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Fig. 6. — Synteny study of cathepsin B genes from clade 8. Homologous contigs of all genomes were aligned in mauve. Alignment was restricted to a 47 000 bp fragment. Orange in the bar indicates homology, grey indicates deletions. The annotated genes are indicated in the features sections of the figure. The chromosome segregation ATPase encoding gene (green arrow) and the cathepsin B gene (red arrow) were deleted in the genomes from assemblages E, AI and AII. Pool 5 (assemblage D) was completely homologous with pool 8.3, but is not shown, because the 47 000 bp region consisted of three short contigs, hampering automated annotation.