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. Author manuscript; available in PMC: 2020 Apr 1.
Published in final edited form as: Nat Rev Microbiol. 2019 Apr;17(4):203–218. doi: 10.1038/s41579-018-0147-4

Table 1 |.

Selected major genomic elements in Methicillin-resistant Staphylococcus aureus

category Gene name Gene product Function Location
Antibiotic resistance aacA-aphD Bifunctional AAC-APH protein Aminoglycoside resistance Transposon
aadD Aminoglycoside adenyltransferase Aminoglycoside resistance Plasmid
ant(4’) O-nucleotidyltransferase(4’) Aminoglycoside resistance
  • SCCmec

  • Plasmid

ant(9) O-nucleotidyltransferase(9) Aminoglycoside resistance Transposon
blaZ β-Lactamase Penicillin resistance
  • Plasmid

  • Transposon

bleO Bleomycin binding protein Bleomycin resistance
  • SCCmec

  • Plasmid

cat Chloramphenicol acetyltransferase Chloramphenicol resistance Plasmid
dfrA and dfrK Dihydrofolate reductase Trimethoprim resistance Plasmid
ermA rRNA methylase Macrolide resistance Transposon
ermC rRNA methylase Macrolide, lincosamide and streptogramin resistance Plasmid
ileS Isoleucyl-tRNA synthetase Mupirocin resistance Plasmid
mecA Penicillin-binding protein 2 Methicillin resistance SCCmec
tetK Tetracycline resistance protein Tetracycline resistance Plasmid
tetM Tetracycline resistance protein Tetracycline resistance Transposon
Antiseptic or heavy metal resistance arsRBC Efflux ATPase Heavy metal resistance Plasmid
cadA and cadB Cadmium efflux ATPase Heavy metal resistance Plasmid
qacA Antiseptic resistance protein qacA Antiseptic efflux pump Plasmid
merA and merB Mercuric reductase Heavy metal resistance Transposon
Virulence factorsa aur Aureolysin Tissue destruction Core
capA and capP Capsular polysaccharide biosynthesis proteins Immune evasion Core
chp Chemotaxis inhibitory protein Immune evasion Bacteriophage
clfA and clfB Fibrinogen binding proteins Adhesion Core
coa Staphylocoagulase Coagulation Core
ebhA and ebhaB Extracellular matrix-binding proteins Adhesion Core
eta Exfoliative toxin A Scalded skin syndrome Plasmid
etb Exfoliative toxin B Scalded skin syndrome Bacteriophage
etd Exfoliative toxin D Scalded skin syndrome vSAγ
geh Lipase Lipid degradation Core
hld S-Haemolysin Haemolysis Core
hlgA, hlgB and hlgC y-Haemolysin components Haemolysis Core
hysA Hyaluronidase Tissue invasion vSaβ
lukD and lukE Leukotoxins Immune evasion SaPI
lukS-PV and lukF-PV Panton-Valentine leukocidin Leukotoxin Bacteriophage
sak Staphylokinase (protease III) Clot dissolution Bacteriophage
sea Enterotoxin A superantigen Food poisoning Bacteriophage
seb and sec Enterotoxin B and enterotoxin C (superantigens) Food poisoning SaPI
seq2 and sek2 Enteroxin and superantigen Food poisoning SaPI
sep Enteroxin P Food poisoning Bacteriophage
spa Immunoglobulin G-binding protein A Immune evasion Core
sspA Serine protease Tissue destruction Core
sspB Cysteine protease Tissue destruction Core
tst Toxic shock syndrome toxin 1 Superantigen SaPI

List compiled from REFS26,77,177,178. rRNA, ribosomal RNA; SaPI, Staphylococcus aureus pathogenicity island.

a

Not a comprehensive list.