. 2020 Jan 2;7:3. doi: 10.1038/s41597-019-0342-9

Table 4.

Performances reported for PubTator.

Entity type	Tool	Evaluated on	Performance
Entity type	Tool	Evaluated on	P	R	F1
Chemicals	Dictionary-based⁴⁹	n/a	n/a	n/a	53.82
Disease	DNorm⁵⁰	NCBI Disease	82.8	81.9	80.9
Disease	DNorm⁵⁰	Corpus	82.8	81.9	80.9
Gene	GeneTUKit⁵¹	n/a	n/a	n/a	82.97
Gene	GeneTUKit⁵¹	GNAT-100	43.0	56.7	48.9
Mutation	tmVar⁵²	MutationFinder	98.80	89.62	93.98
Mutation	tmVar⁵²	Corpus	98.80	89.62	93.98

PubTator is the NER tool used during the pre-annotation step of PGxCorpus. P, R and F1 stand for Precision, Recall and F1-score, respectively. n/a denotes we were not able to find information to fill the cell.