Table 1.
Putative regulatory pairs between Differentially Expressed Genes (DEGs) encoding transcription factors and predicted targets identified within photosynthesis-related genes.
| Transcription Factor Gene ID | FC of TF Gene | FDR | TF Family | Description of TF Gene | Target Gene ID | Target Description | FC of Target Gene | FDR |
|---|---|---|---|---|---|---|---|---|
| HORVU4Hr1G078410 | −20.36 | 2.25 × 10−15 | HD-ZIP | Homeobox-leucine zipper protein family | HORVU2Hr1G010630 | ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] | −432.2 | 1.56 × 10−4 |
| HORVU1Hr1G073300 | −12.71 | 7.62 × 10−5 | MYB_related | myb-like transcription factor family protein | HORVU1Hr1G035720 | ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] | −37.5 | 1.26 × 10−84 |
| HORVU6Hr1G066000 | −8.18 | 9.07 × 10−5 | MYB_related | myb-like transcription factor family protein | HORVU1Hr1G067300 | phosphoglycerate kinase [EC:2.7.2.3] | −52.7 | 2.27 × 10−32 |
| HORVU6Hr1G019650 | −7.20 | 8.16 × 10−6 | G2-like | myb-like transcription factor family protein | HORVU5Hr1G109260 | light-harvesting complex II chlorophyll a/b binding protein 1 | −1357 | 5.10 × 10−37 |
| HORVU5Hr1G014170 | −5.41 | 5.13 × 10−4 | bZIP | Basic-leucine zipper (bZIP) transcription factor family protein | HORVU2Hr1G060480 | photosystem I subunit X | −54.7 | 2.56 × 10−27 |
| HORVU3Hr1G088200 | −3.78 | 3.03 × 10−3 | WRKY | WRKY DNA-binding protein 33 | HORVU5Hr1G087250 | light-harvesting complex II chlorophyll a/b binding protein 1 | −13.1 | 1.86 × 10−6 |
| HORVU3Hr1G032440 | −3.26 | 8.28 × 10−4 | G2-like | Two-component response regulator-like APRR2 | HORVU2Hr1G075200 | F-type H+-transporting ATPase subunit b | −52.7 | 2.84 × 10−16 |
| HORVU2Hr1G060680 | −2.62 | 6.33 × 10−4 | bHLH | Transcription factor PIF5 | HORVU6Hr1G033160 | light-harvesting complex I chlorophyll a/b binding protein 3 | −30.2 | 5.16 × 10−11 |
| HORVU6Hr1G074970 | −2.37 | 2.93 × 10−3 | ERF | Ethylene-responsive transcription factor 1 | HORVU3Hr1G013350 | triosephosphate isomerase (TIM) [EC:5.3.1.1] | −6.7 | 8.10 × 10−16 |
| HORVU4Hr1G052330 | 2.46 | 3.42 × 10−3 | bZIP | transcription factor-related | HORVU2Hr1G063740 | glutamate--glyoxylate aminotransferase [EC:2.6.1.4 2.6.1.2 2.6.1.44] | −8.0 | 2.03 × 10−11 |
| HORVU1Hr1G074960 | 2.80 | 4.37 × 10−8 | bZIP | G-box binding factor 4 | HORVU1Hr1G021830 | cytochrome b6-f complex subunit 4 | −4.3 | 1.49 × 10−3 |
| HORVU5Hr1G036330 | 3.05 | 7.45 × 10−4 | GATA | GATA transcription factor 9 | HORVU6Hr1G051650 | photosystem II oxygen-evolving enhancer protein 3 | −202.0 | 7.00 × 10−4 |
| HORVU1Hr1G090030 | 3.06 | 8.67 × 10−8 | bZIP | G-box binding factor 2 | HORVU2Hr1G062090 | cytochrome b6 | −6.7 | 6.65 × 10−9 |
| HORVU4Hr1G020540 | 3.12 | 2.20 × 10−4 | bZIP | Transcription factor VIP1 | HORVU2Hr1G043240 | photosystem II P680 reaction center D1 protein [EC:1.10.3.9] | −5.9 | 5.99 × 10−13 |
| HORVU2Hr1G119610 | 3.53 | 4.62 × 10−4 | MYB_related | myb-like transcription factor family protein | HORVU2Hr1G043240 | photosystem II P680 reaction center D1 protein [EC:1.10.3.9] | −5.9 | 5.99 × 10−13 |
| HORVU4Hr1G051290 | 10.72 | 1.46 × 10−9 | NAC | NAC domain protein. | HORVU6Hr1G037020 | photosystem I P700 chlorophyll a apoprotein A1 | −5.9 | 4.15 × 10−7 |
| HORVU2Hr1G021080 | 13.16 | 5.84 × 10−7 | bZIP | Basic-leucine zipper (bZIP) transcription factor family protein | HORVU2Hr1G062090 | cytochrome b6 | −6.7 | 6.65 × 10−9 |