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. 2019 Dec 24;29(13):4496–4508.e4. doi: 10.1016/j.celrep.2019.11.094
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit monoclonal anti-eIF2α (phosphorylated, Ser51) Abcam Cat#ab32157; RRID:AB_732117
Rabbit polyclonal anti-ULK1 Abcam Cat#ab240916
Mouse monoclonal anti-G3BP1 BD Biosciences Cat#611126; RRID:AB_398437
Mouse monoclonal anti-TIAR BD Biosciences Cat#610352; RRID:AB_397742
Rabbit polyclonal anti-IFNAR1 Bethyl Cat#A304-290A; RRID:AB_2620486
Rabbit polyclonal anti-OPTN Bethyl Cat#A301-829A; RRID:AB_1264331
Rabbit polyclonal anti-TBK1 Bethyl Cat#A300-093A; RRID:AB_2303002
Rabbit polyclonal anti-cleaved caspase 3 Cell Signaling Cat#9661S; RRID:AB_2341188
Rabbit monoclonal anti-eIF2α (total) Cell Signaling Cat#D7D3; RRID:AB_10692650
Mouse monoclonal anti-puromycin (clone 12D10) Merck Millipore Cat#MABE343; RRID:AB_2566826
Rabbit polyclonal anti-FUS Proteintech Cat#11570-1-AP; RRID: AB_2247082
Rabbit polyclonal anti-Nup107 Proteintech Cat#19217-1-AP; RRID:AB_10597702
Rabbit polyclonal anti-Nup98-Nup96 Proteintech Cat#12329-1-AP; RRID:AB_10973678
Rabbit polyclonal anti-YBX1 Proteintech Cat#20339-1-AP; RRID:AB_10665424
Rabbit polyclonal anti-ATXN2 Proteintech Cat#21776-1-AP; RRID:AB_10858483
Rabbit polyclonal anti-KPNA2 Proteintech Cat#10819-1-AP; RRID:AB_2265526
Rabbit polyclonal anti-TNPO1 Proteintech Cat#20679-1-AP; RRID:AB_10694291
Mouse monoclonal anti-FUS Santa Cruz Cat#sc-47711; RRID:AB_2105208
Rabbit polyclonal anti-βIII-tubulin (Tuj) Sigma-Aldrich Cat#T2200; RRID:AB_262133
Mouse monoclonal anti-β-actin Sigma-Aldrich Cat#A5441; RRID:AB_476744

Bacterial and Virus Strains

NEB 5-alpha Competent E. coli New England Biolabs Cat#C2987
Respiratory syncytial virus (RSV) wild-type strain A2 Openshaw Lab 18287232 (first used in this study) N/A

Biological Samples

Spinal cord tissue from ALS patients and healthy individuals (frozen) Sheffield Brain Tissue Bank Request No.15-011
Spinal cord tissue from ALS patients and healthy individuals (paraffin blocks) MRC London Neurodegenerative Diseases Brain Bank Request No.1470

Chemicals, Peptides, and Recombinant Proteins

MG132 (proteasome inhibitor) Calbiochem Cat#474790
Pifithrin-μ (HSP70 inhibitor) Enzo Life Sciences Cat#BML-AP503
Polyinosinic–polycytidylic acid potassium salt, poly(I:C) Sigma-Aldrich Cat#P9582
Sodium arsenite Sigma-Aldrich Cat#35000
Dithiothreitol (DTT) Sigma-Aldrich Cat#43815
Interferon beta-1a Sigma-Aldrich Cat#IF014
Cycloheximide Sigma-Aldrich Cat#C7698
Puromycin dihydrochloride Sigma-Aldrich Cat#P8833
5,6-Dichlorobenzimidazole 1-β-D-ribofuranoside (DRB) Sigma-Aldrich Cat#D1916
Actinomycin D Sigma-Aldrich Cat#A1410

Critical Commercial Assays

GenElute™ Total RNA Purification Kit Sigma-Aldrich Cat#RNB 100
RNase free DNase set QIAGEN Cat#79254
USB® Poly(A) Tail-Length Assay Kit Thermo Scientific Cat#764551KT
FuGENE® HD transfection reagent Promega Cat#E2311
DreamTaq HS polymerase Thermo Scientific Cat#EP2702
SuperScript IV Reverse Transcriptase Thermo Scientific Cat# 18090010
Lipofectamine 2000 transfection reagent Thermo Scientific Cat#11668027

Experimental Models: Cell Lines

Human: SH-SY5Y neuroblastoma cells (ATCC) Sigma-Aldrich Cat#94030304
Human: SH-SY5Y FUS line: ΔNLS1_ho (homozygous) An et al., 2019 N/A
Human: SH-SY5Y FUS line: ΔNLS4_ho (homozygous) An et al., 2019 N/A
Human: SH-SY5Y FUS line: ΔNLS7_ho (homozygous) An et al., 2019 N/A
Human: SH-SY5Y FUS line: ΔNLS2_het (heterozygous, FUS granule positive) An et al., 2019 N/A
Human: SH-SY5Y FUS line: ΔNLS8_het (heterozygous) An et al., 2019 N/A
Human: SH-SY5Y FUS line: ΔNLS10_het (heterozygous) An et al., 2019 N/A
Human: SH-SY5Y FUS line: ΔNLS11_het (heterozygous, FUS granule positive) An et al., 2019 N/A
Human: SH-SY5Y FUS line: FUS knockout line An et al., 2019 N/A
Human: primary fibroblasts (healthy control and bearing FUS P525L mutation) Lo Bello et al., 2017 N/A
Human: Day 40 motor neurons derived from hES H9 cells Shelkovnikova et al., 2017 N/A

Oligonucleotides

Primers for qRT-PCR, see Table S1 An et al., 2019 and this paper N/A
Primer: Poly(A) tail assay for FUS, P1: 5′-GTCCAGCCCA
TGTGAGACTT-3′
This paper N/A
Primer: Poly(A) tail assay for FUS, P2: 5′-AACCTCCAGC
ATAAAAGGGCT-3′
This paper N/A
siRNA, targeting human STAT1: MISSION® esiRNA Sigma-Aldrich Cat#EHU010121
siRNA, scrambled: AllStars Negative Control siRNA QIAGEN Cat#SI03650318

Recombinant DNA

Plasmid: FUS R522G GFP Shelkovnikova et al., 2014a N/A

Software and Algorithms

CellF software Olympus N/A
Zen software Zeiss https://www.zeiss.com/microscopy/int/products/microscope-software/zen.html
ImageJ Schneider et al., 2012 https://imagej.nih.gov/ij/
Adobe Photoshop CS3 Adobe Inc. https://www.adobe.com/uk/products/photoshop.html
GraphPad Prism 6 GraphPad Software, Inc. https://www.graphpad.com/scientific-software/prism/
Leica Application Suite AF software Leica Microsystems https://www.leica-microsystems.com/products/microscope-software/p/leica-application-suite/

Other

BX61 microscope equipped with F-View II camera Olympus https://www.olympus-ims.com/en/microscope/bx61-2/
LSM880 microscope Zeiss https://www.zeiss.com/microscopy/int/products/confocal-microscopes.html
EVOS XL Core system Thermo Scientific Cat#AMEX1100
Leica TCS SP2 MP confocal microscope Leica Microsystems https://www.leica-microsystems.com/products/confocal-microscopes/p/leica-tcs-sp2/
StepOnePlus™ Real-Time PCR System Thermo Scientific Cat#4376600