Table 4.
The expression profile of candidate markers during SE and in nine tissues of longan
| Gene_id | Gene name | FPKM value | Putative protein function/homology | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NEC | EC | ICpEC | GE | Root | Stem | Leaf | Flower | Flower bud | Young fruit | Pericarp | Pulp | Seed | |||
| Dlo_017092.1 | LEC1 | 0 | 2118.54 | 1262.61 | 727.62 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1.52 | leafy cotyledon 1 transcription factor |
| Dlo_020821.1 | L1L | 0.21 | 511.04 | 393.39 | 1665.7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 209.01 | leafy cotyledon 1-like protein |
| Dlo_022316.1 | WOX9 | 1.34 | 1602.12 | 1424.69 | 665.41 | 0.3 | 0 | 0 | 0 | 0.52 | 1.5 | 0 | 5.98 | 0.67 | WUSCHEL-related homeobox 9 |
| Dlo_032045.1 | WOX2 | 0.48 | 141.61 | 83.91 | 59.36 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.17 | WUSCHEL-related homeobox 2 |
| Dlo_011527.1 | BBM | 6.28 | 367.26 | 484.12 | 511.04 | 9.86 | 0.28 | 0.1 | 0.12 | 0.19 | 0.34 | 0.14 | 0 | 0.67 | AP2/ERF, BABYBOOM |
| Dlo_004646.1 | PLT2 | 3.94 | 491.37 | 610.1 | 759.4 | 0.41 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | AP2/ERF, PLT2 |
| Dlo_012160.1 | ABI3 | 0 | 82.94 | 177.78 | 374.51 | 0 | 0 | 0 | 0.13 | 13.28 | 0 | 0 | 0 | 119.83 | ABA-insensitive protein 3 |
| Dlo_022372.1 | LEC2 | 0 | 45.35 | 55.63 | 51.22 | 0.11 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.4 | leafy cotyledon 2 transcription factor |
| Dlo_024008.1 | FUS3 | 0 | 5.75 | 37.93 | 260.7 | 0 | 0 | 0 | 0 | 0.35 | 0 | 0 | 0 | 60.65 | FUSCA3 |
| Dlo_017585.1 | AGL80 | 0 | 829.45 | 590.14 | 278.12 | 0.62 | 0.58 | 0.82 | 0.49 | 0 | 0.29 | 0.84 | 0.58 | 1.56 | Agamous-like MADS-box protein 80 |
| Dlo_020986.1 | GH3.6 | 0.06 | 4136.45 | 2439.09 | 1630.99 | 0 | 1.2 | 0.06 | 843.22 | 0.32 | 0 | 0.25 | 0.2 | 0.14 | IAA-amido synthetase GH3.6 |
| Dlo_020694.1 | PIN1 | 3.23 | 216.9 | 96.91 | 100.29 | 0 | 0 | 0 | 0.07 | 0 | 0 | 0 | 0 | 3.04 | Auxin efflux carrier component 1 |
| Dlo_030812.1 | PDF1.3 | 15.81 | 15,114.88 | 10,330.16 | 1899.07 | 0.68 | 0 | 0.16 | 2.4 | 60.18 | 76.88 | 21.19 | 680.91 | 16.67 | Protodermal factor 1.3 |
| Dlo_027182.2 | GRP-5 | 0 | 1699.47 | 1094.49 | 874.66 | 0 | 0.35 | 0 | 0 | 0.32 | 0 | 0 | 0 | 8.03 | glycine-rich protein 5 |
| Dlo_032565.1 | CYP78A5 | 0.97 | 320.4 | 102.08 | 12.72 | 31.26 | 0 | 1.85 | 0.09 | 6.93 | 1.78 | 0.4 | 0.47 | 4.39 | Cytochrome P450 family 78A5 |
| Dlo_017331.1 | CYP87A3 | 0 | 274.33 | 130.99 | 25.01 | 0 | 0.11 | 0 | 5.98 | 0.63 | 0.22 | 0.22 | 4.42 | 0.18 | Cytochrome P450 family 87A3 |
| Dlo_026048.1 | RGF3 | 0 | 2219.4 | 6620.49 | 3762.46 | 0 | 0 | 0 | 3.27 | 1.96 | 0 | 0 | 0 | 0 | root meristem growth factor 3 |
| Dlo_026819.1 | GIF2 | 0 | 726.78 | 454.72 | 339.9 | 0 | 0.94 | 0 | 1.08 | 6.39 | 0.45 | 0.3 | 1.79 | 12.93 | GRF1-interacting factor 2, GIF2 |
| Dlo_013012.1 | LTP | 6.56 | 7392.37 | 4301.99 | 4004.61 | 3.92 | 1182.18 | 5.16 | 1241.54 | 1954.47 | 354.17 | 62.65 | 4225.76 | 67.83 | Lipid transfer protein |
| Dlo_031913.1 | LBP | 3.92 | 2959.02 | 4694.68 | 2957.57 | 1.19 | 25.49 | 12.3 | 28.54 | 27.78 | 32.46 | 4.93 | 428.03 | 5.16 | Lipid binding protein |
| Dlo_025851.1 | MAM7 | 3.43 | 1112.42 | 436.33 | 119.05 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | mannan endo-1,4-beta-mannosidase 7 |
| Dlo_029005.1 | ZDS | 0 | 1819.85 | 1213.68 | 932.22 | 0.15 | 0.15 | 0.11 | 0.76 | 0.81 | 20.69 | 0.42 | 14.54 | 2.2 | zeta-carotene desaturase |
| Dlo_023272.1 | KCS | 0 | 511.05 | 371.46 | 205.05 | 0 | 0 | 0.08 | 0 | 0.1 | 1.36 | 0 | 1.49 | 0.09 | 3-ketoacyl-CoA synthase (fatty acid) |
| Dlo_032570.1 | RPL17 | 0 | 1081.06 | 1123.65 | 990.78 | 48.99 | 40.71 | 0 | 0 | 3.48 | 3.17 | 0 | 0 | 0 | 60S ribosomal protein L17 |
| Dlo_033433.1 | DlU1 | 3.52 | 2202.74 | 1163.64 | 830.54 | 14.46 | 1.61 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | Unknown 1 |
| Dlo_026772.1 | DlU2 | 0 | 50.68 | 397.92 | 1516.17 | 0.97 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0.24 | Unknown 2 |
| Dlo_028569.1 | DlU3 | 0 | 558.23 | 418.54 | 121.81 | 0.78 | 7.07 | 0 | 3.14 | 4.43 | 3.26 | 3.67 | 0 | 0 | Unknown 3 |
| Dlo_019949.1 | LEA5 | 36,215.45 | 27.67 | 145.54 | 256.16 | 3165.31 | 6822.69 | 861.14 | 7685.55 | 11,712.56 | 3205.39 | 24,022.25 | 1205.56 | 3737.57 | Late embryogenesis abundant protein 5 |
| Dlo_008311.1 | CNOT3 | 11,187.75 | 12.96 | 27.95 | 44.39 | 306.61 | 11,545.36 | 933.45 | 1611.48 | 393.14 | 1560.72 | 2650.38 | 7249.71 | 1296.04 | CCR4-NOT transcription complex 3 |
| Dlo_028175.1 | DlU4 | 10,885 | 0.31 | 2.94 | 3.3 | 5220.16 | 576.03 | 3.61 | 217.29 | 35.02 | 4434.9 | 1942.11 | 5575.02 | 396.85 | Unknown 4 |
| Dlo_017033.1 | PR1–1 | 5645.16 | 40.36 | 26.32 | 10.4 | 2601.85 | 122.2 | 1.45 | 86.79 | 22.85 | 0.96 | 361.66 | 577.38 | 17.99 | Pathogenesis-related protein 1–1 |
| Dlo_022694.1 | DC2.15 | 3546.1 | 0.29 | 0 | 0 | 965.82 | 92.92 | 9.21 | 930.75 | 46.71 | 788.54 | 400.61 | 1323.15 | 301.29 | 14 kDa proline-rich protein DC2.15 |
| Dlo_030516.1 | CHI | 3288.7 | 12.16 | 54.25 | 8.31 | 2.21 | 1.5 | 0.7 | 0.62 | 0.45 | 0 | 0.46 | 1.65 | 0.19 | Chitinase |
| Dlo_030074.1 | PR-4 | 3170.89 | 0.31 | 2.48 | 1.62 | 517.32 | 105.29 | 0.59 | 90.21 | 85.99 | 0.79 | 10.68 | 4.68 | 25.33 | PR-4 protein |
| Dlo_028350.1 | CAT | 2411.98 | 15.42 | 41.81 | 55.28 | 4254.18 | 1219.17 | 398.73 | 293.83 | 464.27 | 651.57 | 3884.71 | 264.3 | 319.86 | Catalase |
| Dlo_011004.1 | NsLTP2 | 2367.71 | 0 | 0 | 0 | 1410.22 | 836.82 | 1.46 | 171.89 | 732.06 | 69.9 | 148.79 | 31.47 | 45.31 | Non-specific lipid-transfer protein 2 |
| Dlo_032927.1 | PIP2.1 | 2191.16 | 8.96 | 7.95 | 4.38 | 2253.88 | 162.85 | 81.62 | 45.29 | 21.99 | 140.46 | 842.74 | 1733.29 | 217.06 | Aquaporin PIP2.1 |
| Dlo_011314.1 | POD P7 | 2007.14 | 3.73 | 4.04 | 2.59 | 67.72 | 32.71 | 1.25 | 33.7 | 10.84 | 1.82 | 24.34 | 4.33 | 1.23 | Peroxidase P7-like |
| Dlo_020889.1 | DlU5 | 1534.05 | 0.27 | 18.34 | 62.55 | 1224.15 | 79.36 | 8.05 | 83.74 | 14.28 | 2100.25 | 1136.71 | 29,080.32 | 892.17 | Unknown 5 |
| Dlo_009170.1 | OSM1 | 1459.85 | 8.09 | 7.15 | 4.64 | 1450.79 | 3031.81 | 58.61 | 3028.02 | 3208.04 | 144.45 | 3184.56 | 2337.21 | 430.64 | Osmotin-like protein 1 |
| Dlo_006330.1 | EXLB1 | 1145.83 | 1.14 | 4.4 | 3.19 | 303.02 | 2258.39 | 7.29 | 32.98 | 200.08 | 12.5 | 543.39 | 0.26 | 111.72 | Expansin-like B1 |
| Dlo_003365.1 | DIR1 | 1049.5 | 0 | 0 | 0 | 614.07 | 12.2 | 5.3 | 35.6 | 37.19 | 284.21 | 88.68 | 0.7 | 24.18 | Lipid-transfer protein DIR1 |
| Dlo_024175.1 | CHI | 983.75 | 0.14 | 0 | 1.5 | 3965.12 | 6.77 | 5.9 | 46.39 | 47.66 | 1.53 | 10.77 | 5.23 | 5.17 | class I chitinase |
| Dlo_011438.1 | PIP1 | 812.41 | 0.56 | 1.69 | 2.71 | 1138.83 | 1183.76 | 441.46 | 491.94 | 345.78 | 1651.58 | 806.49 | 239.44 | 651.72 | Aquaporin PIP1 |
| Dlo_014725.1 | PME1 | 753.54 | 0 | 1.19 | 0.57 | 501.17 | 0.62 | 0.96 | 0.53 | 0 | 16.39 | 1.39 | 21.11 | 8.61 | Pectinesterase precursor |
| Dlo_027164.1 | CHS | 610.74 | 0.1 | 1.76 | 0.91 | 1988.95 | 12.84 | 204.09 | 222.61 | 19.12 | 40.45 | 5.95 | 0.96 | 122.71 | chalcone synthase |
| Dlo_023321.1 | TLP1 | 573.07 | 0.8 | 0.14 | 0.26 | 39.55 | 75.91 | 0.5 | 162.54 | 45.36 | 2.27 | 2.42 | 0.79 | 0.99 | thaumatin-like protein |
| Dlo_000377.1 | POD5 | 566.61 | 1.32 | 1.3 | 1.41 | 79.76 | 728.88 | 601.84 | 3319.92 | 905.76 | 380.12 | 225.83 | 1440.49 | 117.02 | Peroxidase 5 |
| Dlo_004275.1 | TIP2–1 | 546.09 | 0 | 0 | 0 | 55.57 | 139.05 | 71.7 | 147.25 | 132.03 | 102.82 | 84.76 | 0.26 | 45.97 | aquaporin MIP family TIP2–1 |
| Dlo_017039.1 | PR1-like | 462.02 | 7.87 | 3.65 | 2.14 | 52.13 | 26.21 | 0 | 121.87 | 14.14 | 137.08 | 3.17 | 0.42 | 0 | Pathogenesis-related protein 1 |
| Dlo_017003.1 | GAST-like | 459.7 | 0.24 | 5.45 | 5.45 | 28.63 | 219.33 | 1.56 | 1181.5 | 449.48 | 0.89 | 3.56 | 67.29 | 4.4 | Gibberellic Acid Stimulated Transcript-like |
| Dlo_012593.1 | DlU6 | 433.86 | 0 | 0 | 0 | 0 | 0 | 0.64 | 0 | 0.73 | 1.88 | 0.74 | 0 | 0 | Unknown 6 |
| Dlo_005429.1 | ERF114 | 352.05 | 0 | 2.51 | 1.98 | 9.51 | 137.66 | 32.36 | 98.04 | 49.11 | 1.79 | 2.92 | 0.53 | 3.31 | ethylene-responsive transcription factor |
| Dlo_032871.1 | GST | 293.99 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2.07 | 0 | 0 | glutathione S-transferase |
| Dlo_014570.1 | GLP3 | 259.25 | 0.18 | 4.45 | 4.26 | 107.7 | 0.72 | 4.66 | 2.57 | 1.99 | 0 | 0 | 0 | 0.23 | germin-like protein 3 |