Table 2.
The features and developments of RNAInter
| Feature | RAID v1.0 | RAID v2.0 | RNAInter |
|---|---|---|---|
| Interaction entry* | 6112 (6112) | 5 272 396 (2 426 181) | 41 322 577 (13,653,108) |
| RNA symbol | 2070 | 118 878 | 381 319 |
| Species coverage | 1 | 60 | 154 |
| Interaction type | RNA-protein/RNA-RNA | RNA-Protein/RNA-RNA | RNA-Protein/RNA-RNA/RNA-Compound/RNA-DNA/RNA-Histone modification |
| RNA category | lncRNA/miRNA/mRNA/rRNA/snoRNA | circRNA/lncRNA/miRNA/miscRNA/mRNA/pseudogene/rRNA/scRNA/sncRNA/snoRNA/snRNA/tRNA | circRNA/lncRNA/miRNA/miscRNA/mRNA/pseudogene/rRNA/scRNA/sncRNA/snoRNA/snRNA/sRNA/tRNA/eRNA/ncRNA/piRNA/repeats/ribozyme/scaRNA/shRNA/sRNA |
| Detailed information | Basic annotations/Evidence support/Reference/Tissue or cell line | Basic annotations/Evidence support/Interactor homolog/Integrated confidence score/Reference/RNA-binding sites | Basic annotations/Evidence support/Interactor homolog/Integrated confidence score/Reference/RNA-binding sites/Homology interaction/RNA editing/RNA localization/RNA modification/Target region |
| Data visualization | Predicted binding sites/ Interaction network | Predicted binding sites | Predicted binding sites/Interaction network/RNA dynamic expression/RNA structure |
| Web application | - | Advanced filter search | Exact search/Batch search/Fuzzy search/Four interactome tools: RIscoper, IntaRNA, PRIdictor, DeepBind |
*The number in brackets counts interactions entries verified by experimental methods.