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. 2019 Sep 17;48(D1):D189–D197. doi: 10.1093/nar/gkz804

Table 2.

The features and developments of RNAInter

Feature RAID v1.0 RAID v2.0 RNAInter
Interaction entry* 6112 (6112) 5 272 396 (2 426 181) 41 322 577 (13,653,108)
RNA symbol 2070 118 878 381 319
Species coverage 1 60 154
Interaction type RNA-protein/RNA-RNA RNA-Protein/RNA-RNA RNA-Protein/RNA-RNA/RNA-Compound/RNA-DNA/RNA-Histone modification
RNA category lncRNA/miRNA/mRNA/rRNA/snoRNA circRNA/lncRNA/miRNA/miscRNA/mRNA/pseudogene/rRNA/scRNA/sncRNA/snoRNA/snRNA/tRNA circRNA/lncRNA/miRNA/miscRNA/mRNA/pseudogene/rRNA/scRNA/sncRNA/snoRNA/snRNA/sRNA/tRNA/eRNA/ncRNA/piRNA/repeats/ribozyme/scaRNA/shRNA/sRNA
Detailed information Basic annotations/Evidence support/Reference/Tissue or cell line Basic annotations/Evidence support/Interactor homolog/Integrated confidence score/Reference/RNA-binding sites Basic annotations/Evidence support/Interactor homolog/Integrated confidence score/Reference/RNA-binding sites/Homology interaction/RNA editing/RNA localization/RNA modification/Target region
Data visualization Predicted binding sites/ Interaction network Predicted binding sites Predicted binding sites/Interaction network/RNA dynamic expression/RNA structure
Web application - Advanced filter search Exact search/Batch search/Fuzzy search/Four interactome tools: RIscoper, IntaRNA, PRIdictor, DeepBind

*The number in brackets counts interactions entries verified by experimental methods.