Skip to main content
. 2019 Oct 10;48(D1):D204–D219. doi: 10.1093/nar/gkz869

Table 2.

Comparison of sRNA expression databases

Feature SEAweb miRmine1 DASHR22 miratlas3 YM500v34 SPAR5
Organisms 10 1 1 2 1 2
sRNA types 5 1 10 1 5 10
Samples >4200 304 802 461 >8000* 365$
Novel miRNAs + +
Ontology search# +
sRNA DE + +
sRNA classification +
Pathogen k-mer expression +
Pathogen k-mer DE +
miRNA targets + +
miRNA disease associations +
User data upload + +
Cross study comparisons + +
Re-analysis with selected samples +
Dataset search + + +
Genome versions + +
Modification analysis + +
Tissue specificity + +

This table includes recent sRNA expression databases and a list of features we deem relevant.

*Supports mainly cancer-related datasets.

#Use of ontological graphs for the annotation and querying of samples.

$Number of datasets based on 2(14) (information about number of samples cannot be obtained).

1(8), 2(14), 3(9), 4(10), 5(11). For number of samples per organism, see Supplementary Material Table S5.