Table 1.
Descriptions of new databases in the 2020 NAR Database issue
| Database Name | URL | Short description |
|---|---|---|
| ABCD | https://web.expasy.org/abcd | AntiBodies chemically defined |
| Alliance of Genome Resources | https://www.alliancegenome.org | Data united across model organisms |
| Animal-ImputeDB | http://gong_lab.hzau.edu.cn/Animal_ImputeDB | Reference panels and imputation methods for animal genomes |
| APAatlas | https://hanlab.uth.edu/apa | Human alternative polyadenylation |
| BacFITBase | http://www.tartaglialab.com/bacfitbase/ | Bacterial genes relevant to host infection |
| BBCancer | http://bbcancer.renlab.org | Blood-based biomarkers for cancer |
| CancerGeneNet | https://signor.uniroma2.it/CancerGeneNet | Paths from cancer mutations to ‘Hallmark phenotypes’ |
| CancerTracer | http://cailab.labshare.cn/cancertracer | Tumor heterogeneity in individual patients |
| CausalDB | http://mulinlab.tmu.edu.cn/causaldb | Predicted causal variants from GWAS |
| CFEA | www.bio-data.cn/CFEA | Cell-free epigenome atlas |
| ChlamDB | https://www.chlamdb.ch | Comparative genomics of the Chlamydiae phylum and the PVC superphylum |
| CRISPRCasdb | https://crisprcas.i2bc.paris-saclay.fr | CRISPR arrays and Cas proteins |
| DNMIVD | http://www.unimd.org/dnmivd | DNA methylation and cancer |
| DrLLPS | http://llps.biocuckoo.cn | Liquid–liquid phase separation of proteins |
| DrugCombDB | http://drugcombdb.denglab.org | Drug combination data |
| ENdb | http://www.licpathway.net/ENdb | Experimentally supported enhances in human and mouse |
| EuRBPDB | http://EuRBPDB.syshospital.org | Eukaryotic RNA binding proteins |
| EWAS Data Hub | http://bigd.big.ac.cn/ewas/datahub | DNA methylation array data and metadata |
| ExonSkipDB | https://ccsm.uth.edu/ExonSkipDB | Exon skipping |
| FoldamerDB | http://foldamerdb.ttk.mta.hu | Peptidic foldamers |
| Gene4Denovo | http://genemed.tech/gene4denovo | Human de novo mutations |
| Genus | http://genus.fuw.edu.pl | Topological characteristics of biomolecular structures |
| Gephebase | https://www.gephebase.org | Genotype–phenotype relationships in eukaryotes |
| GMrepo | https://gmrepo.humangut.info | Human gut metagenomics data |
| gutMDisorder | http://bio-annotation.cn/gutMDisorder | Dysbiosis of the gut microbiota |
| GWAS Atlas | http://bigd.big.ac.cn/gwas | GWAS studies across seven plants and two animals |
| KnockTF | http://www.licpathway.net/KnockTF | Gene expression following TF knockdown/knockout |
| LLPSDB | http://bio-comp.ucas.ac.cn/LLPSDB | Liquid–liquid phase separation of proteins |
| LnCeVar | http://www.bio-bigdata.net/LnCeVar | lncRNA SNPs affecting ceRNA action |
| LncTarD | http://bio-bigdata.hrbmu.edu.cn/LncTarD | lncRNA-mediated regulatory mechanisms and disease |
| MaGenDB | http://magen.whu.edu.cn | Functional genomics hub of Malvaceae eg cotton, cacao |
| malaria.tools | http://malaria.tools | Plasmodium co-expression and co-function networks |
| MBKbase | http://www.mbkbase.org | Plant Molecular Breeding Knowledgebase |
| ncRNA-eQTL | http://ibi.hzau.edu.cn/ncRNA-eQTL | eQTL analysis of ncRNAs |
| OGRDB | https://ogrdb.airr-community.org | Open germline receptor database |
| oRNAment | http://rnabiology.ircm.qc.ca/oRNAment | Predicted RBP binding sites in complete transcriptomes |
| PADS Arsenal | http://bigd.big.ac.cn/padsarsenal | Prokaryotic antiviral defense systems |
| PathBank | http://www.pathbank.org | Pathways in model organisms |
| PGG.Han | http://www.pgghan.org or https://www.hanchinesegenomes.org | Han Chinese genomes |
| PhaSepDB | http://db.phasep.pro | Phase separation related proteins |
| PhaSepPro | http://phasepro.elte.hu | Phase separation related proteins |
| PhenoModifier | https://www.biosino.org/PhenoModifier | Genetic modifiers of human disorders |
| PDBe-KB | http://pdbe-kb.org | Structural and functional annotations of the PDB |
| PmiREN | http://www.pmiren.com | Plant MicroRNA Encyclopedia |
| Pro-Carb | http://structure.bioc.cam.ac.uk/procarb | Protein–carbohydrate interactions |
| QTLbase | http://mulinlab.org/qtlbase | Quantitative Trait Loci across human phenotypes |
| SEAweb | http://sea.ims.bio | Small RNA Expression Atlas |
| snoDB | http://scottgroup.med.usherbrooke.ca/snoDB | Human snoRNAs |
| SNP2APA | http://gong_lab.hzau.edu.cn/SNP2APA | SNPs and alternative polyadenylation in cancer |
| SpatialDB | https://spatialomics.org/SpatialDB/ | Spatially resolved transcriptome |
| SyntDB | http://syntdb.amu.edu.pl | lncRNAs and their evolutionary relationships in primates |
| TerrestrialMetagenomeDB | https://webapp.ufz.de/tmdb | Terrestrial metagenome metadata |
| Thera-SAbDab | http://opig.stats.ox.ac.uk/webapps/therasabdab | Therapeutic antibodies |
| T-psi-C | http://tpsic.igcz.poznan.pl | Experimentally determined tRNA sequences |
| TSEA-DB | https://bioinfo.uth.edu/TSEADB | Tissue specificity of GWAS traits and phenotypes |
| VARIDT | https://db.idrblab.org/varidt | Variability of Drug Transporter Database |
| VDJbase | https://www.VDJbase.org | Genotype and haplotype data from AIRR sequencing |
| VISDB | https://bioinfo.uth.edu/VISDB/index.php | Virus Integration Site DataBase |
| YEASTRACT+ | http://yeastract-plus.org | Transcription regulation in yeasts |