Table 1.
The summary of samples and lncRNA related eQTLs in this study
| Cis | Trans | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Cancer type | No. of samples | No. of ncRNAs | No. of genotypes | Pairs | ncRNAs | eQTLs | Pairs | ncRNAs | eQTLs |
| ACC | 77 | 10 673 | 3 567 953 | 6906 | 229 | 6547 | 1030 | 49 | 934 |
| BLCA | 403 | 12 090 | 4 191 159 | 205 824 | 4077 | 156 228 | 29 840 | 935 | 23 714 |
| BRCA | 1067 | 13 170 | 2 745 615 | 498 969 | 8124 | 308 016 | 62 764 | 2 328 | 46 137 |
| CESC | 242 | 12 410 | 4 276 554 | 101 968 | 2626 | 82 242 | 20 779 | 735 | 17 555 |
| CHOL | 36 | 12 217 | 4 012 151 | 0 | 0 | 0 | 0 | 0 | 0 |
| COAD | 282 | 11 063 | 4 505 758 | 169 256 | 3558 | 129 931 | 25 618 | 859 | 20 423 |
| DLBC | 47 | 11 447 | 4 819 767 | 122 | 8 | 121 | 82 | 4 | 82 |
| ESCA | 148 | 19 921 | 4 431 385 | 44 450 | 1238 | 37 484 | 6177 | 218 | 4723 |
| GBM | 139 | 15 247 | 4 525 414 | 74 593 | 1743 | 61 211 | 6109 | 202 | 5518 |
| HNSC | 492 | 11 768 | 4 249 925 | 294 234 | 4698 | 217 470 | 38 283 | 1 075 | 31 312 |
| KICH | 65 | 11 736 | 3 755 519 | 9 289 | 265 | 8 075 | 382 | 26 | 320 |
| KIRC | 520 | 14 537 | 4 578 071 | 558 380 | 7216 | 380 619 | 57 962 | 1 492 | 47 020 |
| KIRP | 287 | 12 554 | 4 881 400 | 228 243 | 4350 | 175 762 | 28 242 | 905 | 22 640 |
| LAML | 96 | 19 856 | 5 078 753 | 44 537 | 1069 | 34 233 | 5570 | 148 | 4802 |
| LGG | 498 | 14 213 | 4 626 469 | 723 868 | 7844 | 465 249 | 71 517 | 1 595 | 54 899 |
| LIHC | 367 | 9691 | 4 157 271 | 171 255 | 3333 | 128 444 | 22 425 | 764 | 17 725 |
| LUAD | 506 | 13 624 | 4 384 017 | 347 537 | 5714 | 249 589 | 39 040 | 1 130 | 31 147 |
| LUSC | 495 | 14 319 | 3 745 439 | 321 036 | 5556 | 226 779 | 44 235 | 1 236 | 38 111 |
| MESO | 81 | 12 393 | 4 759 523 | 15 045 | 372 | 14 140 | 2152 | 97 | 1779 |
| OV | 251 | 16 660 | 2 966 217 | 102 136 | 3423 | 79 467 | 11 534 | 515 | 9317 |
| PAAD | 177 | 13 298 | 4 991 769 | 139 332 | 2623 | 112 129 | 16 561 | 494 | 13 926 |
| PCPG | 174 | 11 971 | 4 709 166 | 119 083 | 2571 | 93 599 | 16 630 | 552 | 14 066 |
| PRAD | 478 | 12 945 | 4 822 300 | 604 359 | 7181 | 412 073 | 69 412 | 1 686 | 56 307 |
| READ | 91 | 11 298 | 4 540 674 | 18 312 | 539 | 16 750 | 4645 | 153 | 4138 |
| SARC | 257 | 11 454 | 4 087 361 | 105 751 | 2607 | 85 278 | 17 121 | 600 | 14 261 |
| SKCM | 103 | 11 315 | 4 854 570 | 14 150 | 427 | 13 014 | 4856 | 159 | 4501 |
| STAD | 371 | 19 117 | 4 300 207 | 175 519 | 3637 | 128 258 | 21 276 | 635 | 15 847 |
| TGCT | 148 | 14 304 | 4 811 363 | 95 579 | 1989 | 79 971 | 11 477 | 325 | 9839 |
| THCA | 495 | 12 874 | 4 876 701 | 702 674 | 7426 | 464 482 | 57 645 | 1 353 | 44 077 |
| THYM | 119 | 13 223 | 4 930 920 | 92 773 | 1907 | 74 540 | 9355 | 330 | 7028 |
| UCEC | 173 | 11 548 | 4 957 767 | 44 594 | 1327 | 38 605 | 9933 | 411 | 8385 |
| UCS | 55 | 13 439 | 3 871 537 | 51 | 5 | 51 | 0 | 0 | 0 |
| UVM | 77 | 9182 | 4 692 767 | 15 620 | 405 | 14 530 | 3300 | 128 | 2993 |
| Total | 8817 | 26 839 | 7 169 904 | 6 045 445 | 98 087 | 4 294 887 | 715 952 | 21 139 | 573 526 |