Table 1.
Detailed information on the included GEO chips
| GEO ID | BC cases | Mean ± SD (BC) | Normal cases | Mean ± SD (Normal) | P-value | TP | FP | FN | TN |
|---|---|---|---|---|---|---|---|---|---|
| GSE5764 | 10 | 4.07 ± 2.562 | 20 | 3.454 ± 2.43 | 0.5258 | 6 | 8 | 4 | 12 |
| GSE10797 | 28 | 2.843 ± 0.5606 | 5 | 2.508 ± 0.4031 | 0.2127 | 27 | 3 | 1 | 2 |
| GSE21422 | 5 | 5.267 ± 0.8651 | 5 | 3.177 ± 0.2715 | 0.0009 | 5 | 0 | 0 | 5 |
| GSE33692 | 10 | 8.857 ± 0.73 | 3 | 6.358 ± 4.057 | 0.065 | 5 | 1 | 5 | 2 |
| GSE36295 | 45 | 6.697 ± 0.8267 | 5 | 5.097 ± 0.4698 | 0.0001 | 41 | 0 | 4 | 5 |
| GSE42568 | 104 | 2.77 ± 0.766 | 17 | 2.36 ± 0.1706 | 0.0306 | 55 | 1 | 49 | 16 |
| GSE61304 | 58 | 5.213 ± 0.6262 | 4 | 4.137 ± 0.3263 | 0.0013 | 50 | 0 | 8 | 4 |
| GSE61724 | 64 | 7.528 ± 0.8075 | 4 | 5.549 ± 0.6032 | < 0.0001 | 56 | 0 | 8 | 4 |
| GSE7904 | 43 | 6.354 ± 1.171 | 7 | 4.984 ± 0.2128 | 0.0036 | 40 | 1 | 3 | 6 |
| GSE10780 | 42 | 4.179 ± 0.7588 | 143 | 3.635 ± 0.1508 | < 0.0001 | 31 | 30 | 11 | 113 |
| GSE15852 | 43 | 8.672 ± 1.154 | 43 | 8.436 ± 0.9638 | 0.308 | 16 | 5 | 27 | 38 |
| GSE22544 | 14 | 4.03 ± 0.7302 | 4 | 3.339 ± 0.6381 | 0.1073 | 14 | 1 | 0 | 3 |
| GSE25407 | 5 | 5.457 ± 0.1552 | 5 | 5.43 ± 0.1903 | 0.8094 | 2 | 1 | 3 | 4 |
| GSE29431 | 54 | 4.289 ± 0.6965 | 12 | 3.572 ± 0.2108 | 0.0008 | 36 | 0 | 18 | 12 |
| GSE54002 | 417 | 5.399 ± 0.9674 | 16 | 4.3 ± 0.2051 | < 0.0001 | 321 | 16 | 96 | 0 |
| GSE61723 | 33 | 1.508 ± 0.2752 | 17 | 1.208 ± 0.2585 | 0.0005 | 23 | 4 | 10 | 13 |
| GSE65194 | 153 | 4.829 ± 1.443 | 11 | 3.358 ± 0.4556 | 0.001 | 112 | 2 | 41 | 9 |
| GSE6883 | 6 | 7.749 ± 0.9192 | 3 | 6.301 ± 0.3781 | 0.0381 | 6 | 0 | 3 | 3 |