Table 2. Summary of sequence assembly after Illumina sequencing.
| Sample name | Raw reads | Clean reads | clean bases | Error rate (%) | Q20 (%) | Q30 (%) | GC content (%) |
|---|---|---|---|---|---|---|---|
| Sham_1 | 56,509,230 | 55,796,658 | 8.37G | 0.03 | 97.73 | 93.95 | 51.23 |
| Sham_2 | 48,848,744 | 48,226,002 | 7.23G | 0.03 | 97.6 | 93.67 | 51.71 |
| Sham_3 | 58228350 | 57,459,748 | 8.62G | 0.03 | 97.67 | 93.78 | 51.42 |
| SCI_C1 | 58,862,872 | 58,126,844 | 8.72G | 0.03 | 97.88 | 94.31 | 51.39 |
| SCI_C2 | 56,980,070 | 56,166,058 | 8.42G | 0.03 | 97.74 | 94.03 | 51.42 |
| SCI_C3 | 59,804,518 | 58,798,224 | 8.82G | 0.03 | 97.63 | 93.74 | 51.02 |
| SCI_P1 | 54,853,344 | 53,996,254 | 8.1G | 0.03 | 97.72 | 93.91 | 50.93 |
| SCI_P2 | 56,322,736 | 55,540,308 | 8.33G | 0.03 | 97.87 | 94.27 | 50.94 |
| SCI_P3 | 61,037,096 | 60,037,772 | 9.01G | 0.03 | 97.71 | 93.89 | 50.92 |
Note:
Sham: Sham_1, Sham_2, Sham_3; SCI (solvent control): SCI_C1, SCI_C2, SCI_C3; SCI (probenecid): SCI_P1, SCI_P2, SCI_P3; Q20: the percentage of bases with a Phred value >20; Q30: the percentage of bases with a Phred value >30.