Table 4.
Recombination Patterns Summarized from 18 Published Vascular Plant Mitogenomes
| Species | Repeats ≥1,000 bp |
Repeats <1,000 bp |
Study | ||
|---|---|---|---|---|---|
| Proportion Active | Max AGC % | Proportion Active | Max AGC % | ||
| Chrysanthemum nankingense | na | na | 0.17 | 4 | Wang et al. (2018) |
| Cucumis sativus | 1 | 50 | 0.08 | 5 | Alverson, Rice, et al. (2011) |
| Daucus carota | 0.25 | 50 | 0.00 | 0 | Iorizzo et al. (2012) |
| Eucalyptus grandis | 0.40 | 31 | 0.04 | 23 | Pinard et al. (2019) |
| Ginkgo biloba | 1.00 | 50 | 0.00 | 0 | Guo et al. (2016) |
| Mimulus guttatus b | 1.00 | 50 | 0.38a | 50 | Mower, Floro, et al. (2012) |
| Monsonia ciliate | — | — | 0.00 | 0 | Cole et al. (2018) |
| Monsonia herrei | na | Na | 0.00 | 0 | Cole et al. (2018) |
| Nymphaea colorata | 0.00 | 8 | 0.00 | 0 | Dong et al. (2018) |
| Ophioglossum californicum | 0.50 | 25 | 0.00 | 0 | Guo et al. (2016) |
| Picea abies | 0.50 | 6 | 0.13 | 31 | This study |
| Psilotum nudum | 0.00 | 0 | 0.03 | 2 | Guo et al. (2016) |
| Silene conica | 0.48 | 13 | 0.06 | 15 | Sloan et al. (2012) |
| Silene noctiflora | 0.78 | 10 | 0.00 | 0 | Sloan et al. (2012) |
| Silene vulgaris | 1.00 | 50 | 0.14 | 10 | Sloan et al. (2012) |
| Vigna angularis | 1.00 | 33 | 0.26 | 24 | Naito et al. (2013) |
| Viscum scurruloideum | — | — | 0.66 | 50 | Skippington et al. (2015) |
| Welwitschia mirabilis | na | na | 0.00 | 0 | Guo et al. (2016) |
Note.—“Proportion active” refers to the fraction of repeats producing alternative genome configurations (AGCs) inferred to be the product of recombination in frequencies ≥1.6% of the parent molecule. “Max AGC” denotes the maximum frequency obtained by any AGC in the given repeat size class. Missing data because repeats of a size class do not exist in a given genome are listed as “na”, whereas “–” indicates missing data due to study limitations.
a
Minimum detection threshold is ∼4%, thus this proportion is underestimated.
b
Only inverted repeats analyzed.