Table 3:
Type | Repbase TEs | TE proteins | De novo | Combined TEs | ||||
---|---|---|---|---|---|---|---|---|
Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | |
DNA | 131,799,733 | 13.11 | 2,434,533 | 0.24 | 19,288,080 | 1.92 | 149,711,951 | 14.90 |
LINE | 16,171,649 | 1.61 | 75,759,827 | 7.54 | 131,530,457 | 13.09 | 153,027,744 | 15.23 |
SINE | 142,878 | 0.01 | 0 | 0 | 0 | 0 | 142,878 | 0.014 |
LTR | 26,546,055 | 2.64 | 10,195,324 | 1.01 | 18,421,957 | 1.83 | 45,189,365 | 4.50 |
Other | 89,969,319 | 8.95 | 0 | 0 | 211,157,523 | 21.01 | 230,116,216 | 22.90 |
Unknown | 34,752 | 0.0035 | 0 | 0 | 90,989,908 | 9.05 | 91,007,921 | 9.06 |
Total | 213,558,503 | 21.25 | 88,375,336 | 8.79 | 464,908,824 | 46.26 | 525,492,271 | 52.29 |