Table 4. Inference error rates using different reference genomes compared to B73 for KE DH-lines. Only markers mapped on both the flint reference genome & B73v4 (Jiao et al. 2017) are considered for “critical” markers (error rate > 10%).
| Reference genome | F7 | EP1 | DK105 | PE0075 |
|---|---|---|---|---|
| Overlapping markers to B73v4 | 352,326 | 342,037 | 338,882 | 338,244 |
| ”Critical” markers when using this map | 109 | 113 | 115 | 114 |
| ”Critical” markers when using B73v4 | 271 | 264 | 262 | 262 |
| Relative change in error rate | −5.11% | −3.87% | −4.68% | −3.32% |