Table 2. Significant variants associated with metabolic syndrome.

Chr	SNP	Position	Gene	M	Discovery set			Replication set
					MAF	OR	P	MAF	OR	P
					(case / control)	(95% CI)		(case / control)	(95% CI)
11	rs662799	116663707	APOA5	G	0.345 / 0.288	1.346	2.85×10−10	0.334 / 0.290	1.268	3.19×10−3
						(1.227–1.476)			(1.083–1.485)

Chr, chromosome; rs number, SNP ID in dbSNP database; M, minor allele; MAF, minor allele frequency; OR, odds ratio; CI, confidence interval, respectively