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. 2020 Jan 7;5(1):e00357-19. doi: 10.1128/mSystems.00357-19

TABLE 1.

Topological properties of the empirical networks versus random networks

Data set Empirical networksa
Random networksb
No. of
nodes
No. of
edges
% Pos
edges
R2 of
power
law
avgCN GD avgCC Modularity
(no. of
modules)
GD avgCC Modularity
Entire 266 873 91.6 0.79 6.53 5.14 0.231 0.41 (17) 2.92 ± 0.01 0.023 ± 0.003 0.36 ± 0.01
C 45-76 209 356 83.1 0.93 3.37 5.65 0.100 0.65 (17) 4.22 ± 0.08 0.014 ± 0.006 0.54 ± 0.01
T 45-76 223 380 83.9 0.93 3.43 5.55 0.110 0.63 (19) 4.44 ± 0.07 0.012 ± 0.006 0.54 ± 0.01
C 80-97 217 515 88.3 0.86 4.75 5.17 0.154 0.52 (18) 3.60 ± 0.03 0.019 ± 0.005 0.45 ± 0.01
T 80-97 250 704 90.1 0.74 5.63 5.11 0.190 0.51 (17) 3.38 ± 0.01 0.022 ± 0.005 0.39 ± 0.01
a

% Pos edges, percent positive edges; avgCN, average connectivity; GD, harmonic geodesic distance; avgCC, average clustering coefficient.

b

The mean values ± standard deviations from 100 random networks are shown.