Table 2.

Drug resistance phenotype/genotype mismatches

Patient ID	Sample ID	pDST Profile	WGVA Prediction	Has Low Frequency Variation	Mean Coverage < 100 Reads
552	SRR3743495	MDR	Sens	TRUE
725	SRR5153884	MDR	Sens
740	SRR5153913	MDR	Sens	TRUE
764	SRR3743493	Monoa	Sens	TRUE
773	SRR3743482	Monoa	Sens	TRUE
1242	SRR5153868	Sens	rpsL K43R streptomycin resistant
1247	SRR5153880	Monoa	Sens
1247	SRR5153881	Monoa	Sens
1248	SRR5153901	Sens	gyrA A90V fluoroquinolone resistant
1259	SRR3743371	MDR	Sens		TRUE
1612	SRR6807669	Monoa	Sens		TRUE
1612	SRR6807670	Monoa	Sens		TRUE

^aStreptomycin resistant