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. 2020 Jan 7;11:3. doi: 10.1186/s40104-019-0407-9

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© The Author(s). 2020

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 3 — Reliabilities (r²) of genomic predictions using original GBS (GBS), GBS with imputation of missing genotypes (Be, IM, FI), imputed corrected genotype by IMPUTE2 (GcIM) and true genotypes of GBS markers (GBSr), at four depths, averaged over 10 replicates. Bars indicate SE. Note: MAF criteria were used to delete markers with low MAF values before imputation