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. Author manuscript; available in PMC: 2020 Jan 8.
Published in final edited form as: Biochemistry. 2019 May 23;58(22):2617–2627. doi: 10.1021/acs.biochem.9b00303

Table 1:

Crystallographic Data Collection and Refinement Statistics

PDB code 6BLM 6OGM
Data collection F4-OT uF4-OT
Space group P212121 P1211
Cell dimensions
a, b, c (Å) 47.8, 67.2, 94.8 39.6, 81.6, 96.2
 α, β, γ (°) 90.0, 90.0, 90.0 90.0, 95.6, 90.0
Resolution (Å) 42.69–1.49 (1.54–1.49)* 47.88–1.86 (1.93–1.86)*
Wavelength (Å) 1.0332 1.0332
Rsym 0.08751 (0.697)* 0.117 (0.511)*
Rpim 0.03551 (0.2877)* 0.070 (0.313)*
CC1/2ϒ 0.998 (0.836)ϒ 0.991 (0.726)ϒ
I/ σ 24.2 (2.6)* 9.5 (2.0)*
Completeness (%) 99.6 (98.7)* 97.4 (93.3)*
Redundancy 7.0 (6.8)* 3.6 (3.5)*
Refinement
Resolution (Å) 42.69–1.49 (1.543–1.49)* 47.88–1.86(1.93–1.86)*
No. reflections 356506(33851)* 178400(17024)*
Rwork 0.1968 (0.2581)* 0.1831 (0.2440)*
Rfree± 0.2153 (0.2906)* 0.2237 (0.3058)*
No. atoms 3075 5688
 Protein 2751 5265
 Water 324 423
B-factors2)
 Protein 25.91 24.99
 Water 36.96 32.57
R.m.s. deviations
 Bond lengths (Å) 0.007 0.005
 Bond angles (°) 1.10 0.82
Ramachandran plot
 Favored 99.7 99.7
 Allowed 0.3 0.3
 Outliers£ 0.00 0.00
Molprobity score^ 1.27 / 93rd percentile¥ 1.37 / 92nd percentile¥
*

Values for the corresponding parameters in the outermost shell in parenthesis.

ϒ

CC1/2 is the Pearson correlation coefficient for a random half of the data, the two numbers represent the lowest and highest resolution shell respectively.

±

Rfree is the Rmodel calculated for 5% of the reflections randomly selected and omitted from refinement.

£

There is only one Ramachandran outlier which correspond to a proline residues (Pro 158) on one chain with strong electron density.

^

MolProbity score is calculated by combining clashscore with retainer and Ramachandran percentage and scaled based on X- ray resolution.

¥

The percentage is calculated with 100th percentile as the best and 0th percentile as the worst among structures of comparable resolution.