Table 1:
Crystallographic Data Collection and Refinement Statistics
| PDB code | 6BLM | 6OGM |
|---|---|---|
| Data collection | F4-OT | uF4-OT |
| Space group | P212121 | P1211 |
| Cell dimensions | ||
| a, b, c (Å) | 47.8, 67.2, 94.8 | 39.6, 81.6, 96.2 |
| α, β, γ (°) | 90.0, 90.0, 90.0 | 90.0, 95.6, 90.0 |
| Resolution (Å) | 42.69–1.49 (1.54–1.49)* | 47.88–1.86 (1.93–1.86)* |
| Wavelength (Å) | 1.0332 | 1.0332 |
| Rsym | 0.08751 (0.697)* | 0.117 (0.511)* |
| Rpim | 0.03551 (0.2877)* | 0.070 (0.313)* |
| CC1/2ϒ | 0.998 (0.836)ϒ | 0.991 (0.726)ϒ |
| I/ σ | 24.2 (2.6)* | 9.5 (2.0)* |
| Completeness (%) | 99.6 (98.7)* | 97.4 (93.3)* |
| Redundancy | 7.0 (6.8)* | 3.6 (3.5)* |
| Refinement | ||
| Resolution (Å) | 42.69–1.49 (1.543–1.49)* | 47.88–1.86(1.93–1.86)* |
| No. reflections | 356506(33851)* | 178400(17024)* |
| Rwork | 0.1968 (0.2581)* | 0.1831 (0.2440)* |
| Rfree± | 0.2153 (0.2906)* | 0.2237 (0.3058)* |
| No. atoms | 3075 | 5688 |
| Protein | 2751 | 5265 |
| Water | 324 | 423 |
| B-factors (Å2) | ||
| Protein | 25.91 | 24.99 |
| Water | 36.96 | 32.57 |
| R.m.s. deviations | ||
| Bond lengths (Å) | 0.007 | 0.005 |
| Bond angles (°) | 1.10 | 0.82 |
| Ramachandran plot | ||
| Favored | 99.7 | 99.7 |
| Allowed | 0.3 | 0.3 |
| Outliers£ | 0.00 | 0.00 |
| Molprobity score^ | 1.27 / 93rd percentile¥ | 1.37 / 92nd percentile¥ |
Values for the corresponding parameters in the outermost shell in parenthesis.
CC1/2 is the Pearson correlation coefficient for a random half of the data, the two numbers represent the lowest and highest resolution shell respectively.
Rfree is the Rmodel calculated for 5% of the reflections randomly selected and omitted from refinement.
There is only one Ramachandran outlier which correspond to a proline residues (Pro 158) on one chain with strong electron density.
MolProbity score is calculated by combining clashscore with retainer and Ramachandran percentage and scaled based on X- ray resolution.
The percentage is calculated with 100th percentile as the best and 0th percentile as the worst among structures of comparable resolution.