Table 1.
Read summary statistics and comparative analysis of Avocado and Macadamia RNA-Seq reads and de novo assembled transcripts to publicly available avocado and macadamia genomic resources.
| Avocado | Macadamia | Mango | |
|---|---|---|---|
| NCBI BioSample accession numbers | SRR8926023, SRR8926022, SRR8926017, SRR8926016 | SRR8926019, SRR8926018, SRR8926021, SRR8926020 | SRR8926027, SRR8926026, SRR8926025, SRR8926024 |
| Total number of raw reads | 226341270 | 159438181 | 188997291 |
| Total number of reads after trimming | 209971284 (92.77%) | 150743988 (94.57%) | 167567866 (88.6%) |
| Reference genome size | 912.6 Mbp | 652 Mbp | N/A |
| Number of trimmed reads mapped to reference genome | 166781058 (73.69%) | 127314454 (79.85%) | N/A |
| Average depth of coverage of mapped reads | 29.09 | 20.93 | N/A |
| Reference gene sets (number of sequences) | 24616 | 35337 | N/A |
| Number of unigenes in de novo transcriptome assemblies | 63420 | 78871 | 82198 |
| Unique BLASTN matches to reference gene sets | 22670 (92%) | 27322 (77%) | N/A |
Reference genomes and genesets used for the comparative analysis are Rendón-Anaya et al. (2019) Nock et al. (2016) for avocado and macadamia respectively.