Table 3.
The summary of RNA-seq data
| Sample name | TCF4 silencing-1 | TCF4 silencing-2 | TCF4 silencing-3 | BL-1 | BL-2 | BL-3 | NC-1 | NC-2 | NC-3 |
|---|---|---|---|---|---|---|---|---|---|
| Raw reads | 59346774 | 50942620 | 51720876 | 66320140 | 62381800 | 71570870 | 75780786 | 59406874 | 57284324 |
| Total Raw Bases | 8902016100 | 7641393000 | 7758131400 | 9948021000 | 9357270000 | 10735630500 | 11367117900 | 8911031100 | 8592648600 |
| Clean reads | 57622428 | 49050358 | 49702562 | 64953840 | 61164470 | 70274744 | 74029002 | 57709138 | 55874626 |
| Total Clean Bases | 8538237820 | 7206368995 | 7250768344 | 9335013886 | 8737262491 | 10032724492 | 10531848522 | 8454245384 | 8198181238 |
| Mapped Reads | 54826548 | 46247765 | 47532757 | 61942552 | 58392210 | 67550514 | 70744365 | 54326922 | 53369303 |
| Mapped Ratio | 95.15% | 94.29% | 95.63% | 95.36% | 95.47% | 96.12% | 95.56% | 94.14% | 95.52% |
| Uniqed Mapped Reads | 45051633 | 38200608 | 39142453 | 51515467 | 48568769 | 56467620 | 59137519 | 44646460 | 44184233 |
| Uniqed Mapped Ratio | 78.18% | 77.88% | 78.75% | 79.31% | 79.41% | 80.35% | 79.88% | 77.36% | 79.08% |
| mismatch Ratio | 21.57% | 20.94% | 20.73% | 20.24% | 20.45% | 19.76% | 19.70% | 21.00% | 20.59% |
| rRNA Ratio | 1.12% | 1.13% | 0.81% | 1.51% | 1.51% | 1.55% | 1.38% | 1.32% | 1.47% |