Table 4.
Summary of origin, sequencing, mapping and genome statistics of 16 SwCRV isolates used in this study.
| Farm ID | Sample ID | Total Reads | Total Nucleotides | Mean Read Length | Coverage | Genome Size (bp) | GC Content (%) | ITRs in the SwCRV Genome | GenBank Accession Number | Number of Annotated Genes | References | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Position in Sense-Strand | Position in Antisense-Strand | Length | |||||||||||
| Farm 1 | F1a | 2,182,778 | 464,144,061 | 229.47 | 171.75 | 187,468 | 62.00 | 1-1140 | 187,468-186,329 | 1140 | MK903850 | 216 | This study |
| F1b | 625,406 | 171,737,498 | 289.27 | 367.73 | 187,223 | 62.00 | 1-1622 | 187,223-185,602 | 1622 | MK903851 | 218 | This study | |
| F1c | 2,929,464 | 562,334,027 | 218.46 | 77.96 | 186,383 | 62.00 | 1-902 | 186,383-185,482 | 902 | MK903852 | 213 | This study | |
| F1d | 2,263,362 | 580,836,186 | 256.63 | 1905.90 | 187,976 | 61..90 | 1-1700 | 187,976-186,277 | 1700 | MG450915 | 218 | Sarker et al. 2018 | |
| F1e | 770,348 | 260,017,678 | 267.43 | 476.58 | 184,894 | 62.20 | 1-1254 | 184,894-183,641 | 1254 | MG450916 | 215 | Sarker et al. 2018 | |
| Farm 2 | F2a | 755,168 | 180,551,171 | 260.08 | 268.82 | 187,295 | 62.00 | 1-945 | 187,295-186,351 | 945 | MK903853 | 215 | This study |
| F2b | 684,886 | 183,346,358 | 286.82 | 508.91 | 187,334 | 62.00 | 1-1655 | 187,334-185,680 | 1655 | MK903854 | 217 | This study | |
| F2c | 676,468 | 185,563,388 | 287.19 | 663.98 | 184,469 | 62.30 | 1-1617 | 184,469-182,853 | 1617 | MK903855 | 214 | This study | |
| F2d | 732,772 | 206,557,607 | 286.75 | 981.20 | 187,619 | 62.00 | 1-1291 | 187,619-186,329 | 1291 | MK903856 | 213 | This study | |
| F2e | 2,665,954 | 556,343,609 | 222.95 | 101.11 | 185,923 | 62.00 | 1-882 | 185,923-185,042 | 882 | MK903857 | 211 | This study | |
| Farm 3 | F3a | 1,199,052 | 312,997,159 | 272.30 | 1019.39 | 187,648 | 62.00 | 1-906 | 187,648-186,743 | 906 | MK903858 | 215 | This study |
| F3b | 721,906 | 201,313,232 | 287.37 | 938.56 | 187,549 | 62.00 | 1-1633 | 187,549-185,917 | 1633 | MK903859 | 216 | This study | |
| F3c | 774,274 | 213,662,759 | 286.23 | 699.52 | 187,293 | 62.00 | 1-926 | 187,293-186,368 | 926 | MK903860 | 215 | This study | |
| Farm 4 | F4a | 1,613,140 | 303,995,638 | 197.83 | 1130 | 185,168 | 62.20 | 1-1682 | 185,168-183,487 | 1682 | MK903863 | 215 | This study |
| Farm 5 | F5a | 631,050 | 173,473,167 | 286.76 | 560.34 | 186,462 | 62.10 | 1-877 | 186,462-185,586 | 877 | MK903861 | 212 | This study |
| F5b | 1,877,842 | 352,661,729 | 199.85 | 467.89 | 186,876 | 62.00 | 1-932 | 186,870-185,939 | 932 | MK903862 | 213 | This study | |