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. 2020 Jan 8;5(1):e00685-19. doi: 10.1128/mSphere.00685-19

TABLE 1.

Transcriptomics data for selected genes upregulated in the WT during sorbic acid treatment and differentially expressed in the WT versus ΔwarA mutanta

Gene_ID Log2FC forb :
RPKM forc :
Function(s)d
WT_sorbic vs WT control ΔwarA_sorbic vs ΔwarA control WT_sorbic ΔwarA_sorbic
An14g03570 9.35 7.1 611.3 146 ABC-type transporter with similarity to S. cerevisiae Pdr12p
An12g09130 9.31 5.98 6,055.3 224.7 Possible dienelactone hydrolase function
An02g09970 8.56 4.35 1,532.7 7.3 Ortholog(s) have role in drug response, hexose transport, pathogenesis
An13g02460 8.24 3.08 283 0.3 Protein similar to NRPS (NRPS-like)
An06g02170 7.98 1.51 80.3 3 Ortholog(s) have S-adenosyl-Met-dependent methyltransferase activity
An13g03170 7.25 5.73 1,433.3 465.3 Unknown
An12g09120 7.14 2.87 312.3 31.7 Unknown
An09g03500 6.5 −0.51 226.3 4 Putative benzoate-para-hydroxylase; 3-hydroxybenzoate 4-hydroxylase
An12g02790 5.95 0.36 135.3 2.7 Isoflavone reductase-phenylcoumaran benzylic ether reductase type
An08g07850 5.81 3.77 11,809.3 3,248.7 Unknown
An01g05850 5.59 1.5 75.7 3 Thioesterase domain protein
An08g01560 5.22 −1.47 802.7 5.7 Ortholog(s) have role in meiotic cell cycle, regulation of TORC1 signaling
An04g05240 5.02 2.84 833 259.7 Unknown
An11g04385 4.9 2.02 74 5.7 Possible ubiquitin hydrolase
An13g02450 4.21 0 492.7 0 Six-hairpin glycosidase
An08g01980 3.31 1.71 309 74.7 Unknown
An13g02290 3.06 −0.95 73.3 1.7 Possible 3-dehydroshikimate dehydratase
An09g05760 2.74 −0.47 397.7 40 Ortholog(s) have actomyosin contractile ring, intermediate layer localization
An18g03550 2.45 −2.43 1,506.7 22.3 Similar to yeast Arr3 arsenate transporter
An08g05750 2.26 0.76 1,095 298 Unknown
An16g00700 0.96 −3.07 345 20.7 Has domain(s) with predicted 2Fe-2S cluster binding, oxidoreductase activity
a

See Table S1 for a full list of genes.

b

FC, fold change.

c

RPKM, reads per kilobase per million.

d

NRPS, nonribosomal peptide synthase; TORC1, target of rapamycin complex 1.