TABLE 1.
Transcriptomics data for selected genes upregulated in the WT during sorbic acid treatment and differentially expressed in the WT versus ΔwarA mutanta
| Gene_ID | Log2FC forb
: |
RPKM forc
: |
Function(s)d | ||
|---|---|---|---|---|---|
| WT_sorbic vs WT control | ΔwarA_sorbic vs ΔwarA control | WT_sorbic | ΔwarA_sorbic | ||
| An14g03570 | 9.35 | 7.1 | 611.3 | 146 | ABC-type transporter with similarity to S. cerevisiae Pdr12p |
| An12g09130 | 9.31 | 5.98 | 6,055.3 | 224.7 | Possible dienelactone hydrolase function |
| An02g09970 | 8.56 | 4.35 | 1,532.7 | 7.3 | Ortholog(s) have role in drug response, hexose transport, pathogenesis |
| An13g02460 | 8.24 | 3.08 | 283 | 0.3 | Protein similar to NRPS (NRPS-like) |
| An06g02170 | 7.98 | 1.51 | 80.3 | 3 | Ortholog(s) have S-adenosyl-Met-dependent methyltransferase activity |
| An13g03170 | 7.25 | 5.73 | 1,433.3 | 465.3 | Unknown |
| An12g09120 | 7.14 | 2.87 | 312.3 | 31.7 | Unknown |
| An09g03500 | 6.5 | −0.51 | 226.3 | 4 | Putative benzoate-para-hydroxylase; 3-hydroxybenzoate 4-hydroxylase |
| An12g02790 | 5.95 | 0.36 | 135.3 | 2.7 | Isoflavone reductase-phenylcoumaran benzylic ether reductase type |
| An08g07850 | 5.81 | 3.77 | 11,809.3 | 3,248.7 | Unknown |
| An01g05850 | 5.59 | 1.5 | 75.7 | 3 | Thioesterase domain protein |
| An08g01560 | 5.22 | −1.47 | 802.7 | 5.7 | Ortholog(s) have role in meiotic cell cycle, regulation of TORC1 signaling |
| An04g05240 | 5.02 | 2.84 | 833 | 259.7 | Unknown |
| An11g04385 | 4.9 | 2.02 | 74 | 5.7 | Possible ubiquitin hydrolase |
| An13g02450 | 4.21 | 0 | 492.7 | 0 | Six-hairpin glycosidase |
| An08g01980 | 3.31 | 1.71 | 309 | 74.7 | Unknown |
| An13g02290 | 3.06 | −0.95 | 73.3 | 1.7 | Possible 3-dehydroshikimate dehydratase |
| An09g05760 | 2.74 | −0.47 | 397.7 | 40 | Ortholog(s) have actomyosin contractile ring, intermediate layer localization |
| An18g03550 | 2.45 | −2.43 | 1,506.7 | 22.3 | Similar to yeast Arr3 arsenate transporter |
| An08g05750 | 2.26 | 0.76 | 1,095 | 298 | Unknown |
| An16g00700 | 0.96 | −3.07 | 345 | 20.7 | Has domain(s) with predicted 2Fe-2S cluster binding, oxidoreductase activity |
See Table S1 for a full list of genes.
FC, fold change.
RPKM, reads per kilobase per million.
NRPS, nonribosomal peptide synthase; TORC1, target of rapamycin complex 1.