Table 1.
Overview of the deep sequencing results from the head kidney of fish fed the control diet.
| Sample ID 1 | Total Number of Raw Reads 2 | Trimmed and Filtered Reads 3 | Reads Mapped to miRNAs (%) 4 | Accession Number 5 |
|---|---|---|---|---|
| 1-PBS-T30-2 | 9,609,300 | 4,800,941 | 89.1 | SRR9709006 |
| 2-PBS-T30-3 | 15,384,722 | 9,966,411 | 90.4 | SRR9709007 |
| 3-PBS-T33-3 | 12,674,361 | 8,124,580 | 89.9 | SRR9709008 |
| 4-ASAL-T33-1 | 11,715,675 | 7,190,332 | 89.4 | SRR9709009 |
| 5-ASAL-T30-4 | 14,028,188 | 9,134,360 | 89.7 | SRR9709002 |
| 6-ASAL-T33-3 | 34,491,682 | 8,654,401 | 91.3 | SRR9709003 |
| 7-pIC-T33-2 | 18,600,224 | 8,519,434 | 80.6 | SRR9709004 |
| 8-pIC-T30-3 | 13,957,705 | 9,864,824 | 93.4 | SRR9709005 |
| 9-pIC-T33-3 | 16,877,729 | 5,453,442 | 68.2 | SRR9709010 |
1 The mirVana-prepared total RNAs from three of each PBS-, ASAL-, and pIC-injected individuals fed the control diet were selected for miRNA sequencing analyses. 2 The total number of reads in raw fastq file for each sample. 3 Total number of reads after removing adapters and filtering reads by size (18–25 nt). 4 Percent of trimmed and filtered reads mapped to the reference miRNAome (i.e., all known mature miRNAs of Atlantic salmon) [22]. 5 The accession number of sequencing results for each sample submitted to the NCBI Sequence Read Archive (SRA) database (http://www.ncbi.nlm.nih.gov/sra). All data were deposited under the BioProject PRJNA555179.