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. 2020 Jan 10;21:33. doi: 10.1186/s12864-019-6430-6

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© The Author(s). 2020

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Phylogenomic tree analysis of 53 Strains of Treponema pallidum. The generated distance matrix data from Gegenees was used to generate a phylogenomic tree with SplitsTree (version 4.14.5) using neighbour joining method to create a dendogram. The strains name in the clade represented in red and black showed the Non-venereal and venereal strains of Treponema pallidum, respectively. Non-venereal Treponema pallidum strains are present in same clade. The shapes (circle and triangle) next to the name of the strain indicate the subset of strains used for Pangenome analysis according to the color of the legend respectively