Fig. 3.

DUETT identifies changes in the B.cereus fluoride riboswitch with 0 mM fluoride cotranscriptional SHAPE-Seq reactivity matrices. When comparing to events identified with the fluoride added condition (Fig. 4), DUETT identifies multiple known and novel reactivity events, indicated by arrows to nucleotides participating in these events. The figure is annotated as in Figure 2. RNA structures and pseudoknot (highlighted in yellow) are redrawn from Figure 6 of Watters et al. (2016b)