Figure 5.

(A) Phylogenetic analysis of segment 3. Left tree (major parent) was made from an alignment of nucleotide positions 1-1260 and 1900-2213 and right tree (minor parent) was made from nucleotide positions 1260-1800. M2 strains have been collapsed, and recombinant is colored in pink. (B) BootScan (top) and RDP analyses (bottom of VP3 M2 putative recombinant). The red line compares the minor parent to the recombinant, blue line compares the major parent to the recombinant, and the green line compares the major parent to the minor parent. The Y-axis for BootScan is the bootstrap support, while the Y-axis for the RDP analysis is the pairwise identity. The X-axis in both analyses is the segment 3 sequence.