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Template’s general workflow with TPOT-FSS and example pipelines. Final pipelines with optimized parameters are shown for simulated data (top, green) and real-world RNA-Seq data (bottom, mauve). The specific operators selected in optimal pipelines include built-in TPOT’s operators (OneHotEncoder, FeatureSetSelector) and functions from the library of scikit-learn (ExtraTreesClassifier, Nystroem)
