Table 2.
Procedures and results of transcriptome filtering, annotation and differential expression
| Procedure | CS | HA | PJ | CM |
|---|---|---|---|---|
| Initial | 66,779 | 85,740 | 50,143 | 73,655 |
| Exclude FPKM< 1 | 8773 | 9048 | 9562 | 9061 |
| Annotated in Pfam | 6724 | 6841 | 7097 | 6432 |
| Annotated in NR | 7844 | 8079 | 8179 | 7944 |
| Annotated in KOG | 5434 | 6245 | 5660 | 6432 |
| Annotated in GO | 2987 | 3055 | 1707 | 3176 |
| Up-regulated | 294 | 102 | 99 | 534 |
| Down-regulated | 202 | 200 | 91 | 257 |
FPKM Fragments per kilobase of transcript per million mapped reads, NR Non-redundant database, KOG Eukaryotic Orthologous Groups database, GO Gene Ontology database