Fig. 3.

Plot showing the TPM on plates versus liquid grown cells from RNA-Seq. Two types of data are presented in each plot, the first are comparisons of replicate samples in liquid (blue-white circles) and on plates (gray circles). Note that the replicates rarely diverged from the four-fold range indicated by the parallel bars. The second type is represented by black circles, which showing the mean and SEM of duplicate samples plotted for each gene in plate versus liquid axes. Black circles that lie outside of the bars delineate genes that are regulated > 4-fold between the different conditions for each medium