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Haplotype analysis for two SNPs within Nox4 gene between CIB and healthy individuals by Haploview.
| Haplotype | Freq. | Case, control ratios | P value | OR (95% CI) |
|---|---|---|---|---|
| Block 1 | ||||
| CT | 0.472 | 1,700.7:1,873.3, 778.3:901.7 | 0.384 | 1.053 (0.937, 1.183) |
| CC | 0.301 | 1,048.2:2,525.8, 534.8:1,145.2 | 0.063 | 0.888 (0.783, 1.007) |
| AT | 0.227 | 825.1:2,748.9, 366.9:1,313.1 | 0.318 | 1.074 (0.934, 1.234) |
CIB, chronic infection with HBV (CHB+LC+HCC).
Two SNPs, including rs3017887_A and rs1836882_C were in almost absolute LD.
