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. 2020 Jan 14;13:28. doi: 10.1186/s13071-020-3899-4

Table 2.

Primers for amplification and sequencing

Gene Primer Sequence (5′–3′) Annealing T (°C)
16S rDNA 16SF CGGGGGAAAAATTTATTGCT 55
16SR AGCTGTAATACAGAAAGTAAA
wAlbA-wsp WAF CCAGCAGATACTATTGCG 55
WAR AAAAATTAAACGCTACTCCA
wAlbB-wsp WBF AAGGAACCGAAGTTCATG 55
WBR AAAAATTAAACGCTACTCCA
wsp 81 TGGTCCAATAAGTGATGAAGAAAC 53
691 AAAAATTAAACGCTACTCCA
FtsZ ftsZ-F TACTGACTGTTGGAGTTGTAACTAAGCCGT 58
ftsZ-R TGCCAGTTGCAAGAACAGAAACTCTAACTC
28S rRNA 28F TACCGTGAGGGAAAGTTGAAA 55
28R AGACTCCTTGGTCCGTGTTT
cox1 cox1F TTTACAATTTATCGCCTAAACTTC 55
cox1R CATTGCACTAATCTGCCATA
cox1f GGGGGAGACCCTATTTTATA 55
cox1r TAAACTTCAGGGTGACCAAAAAATCA
wAlbAq-wsp qAF GGGTTGATGTTGAAGGAG 55
qAR CACCAGCTTTTACTTGACC
wAlbBq-wsp qBF ACGTTGGTGGTGCAACATTTG 58
qBR TAACGAGCACCAGCATAAAGC
RPS RPS6-F CGTCGTCAGGAACGTATTCG 55
RPS6-R TCTTGGCAGCCTTGACAGC

Note: Primers cox1f/cox1r were used for sequencing

Abbreviation: T, temperature