Table 7.
Number of scaffolds and ungapped length before and after running Atlas-Link
| Molecule | Scaffolds before | Ungapped length before | Scaffolds after | Ungapped length after | Unplaced scaffolds added | Unplaced ungapped length added |
|---|---|---|---|---|---|---|
| LG1 = X | 13 | 7,011,684 | 13 | 7,071,107 | 2 | 59,423 |
| LG2 | 20 | 14,013,343 | 18 | 14,229,660 | 2 | 216,317 |
| LG3 | 35 | 27,022,651 | 29 | 28,072,007 | 8 | 1,049,356 |
| LG4 | 7 | 11,540,046 | 6 | 11,540,046 | – | – |
| LG5 | 17 | 13,832,902 | 17 | 14,111,830 | 3 | 278,928 |
| LG6 | 15 | 8,229,537 | 12 | 8,262,430 | 2 | 32,893 |
| LG7 | 18 | 14,841,431 | 15 | 15,084,119 | 3 | 242,688 |
| LG8 | 16 | 12,760,817 | 14 | 12,870,760 | 1 | 109,943 |
| LG9 | 21 | 14,567,469 | 21 | 14,900,846 | 2 | 333,377 |
| LG10 | 14 | 7,043,942 | 12 | 7,070,154 | 1 | 26,212 |
| Unplaced multi-contig | 305 | 16,272,476 | 263 | 14,079,574 | ||
| Unplaced single-contig | 1839 | 4,176,957 | 1820 | 4,020,722 | ||
| Total | 2320 | 151,313,255 | 2240 | 151,313,255 |