Table 3. degs Involved in Transport Process, ccm, and Regulation of Gene Expression.

Gene ID	“LOW” versus “HIGH”		LA1920 versus LA0716		Annotation
	Log2FC	FDR	Log2FC	FDR
Transporters
Sopen04g023150	−1.16	2.00E−02	−1.82	4.40E−09	ABC transporter F family member
Sopen01g047950	−1.68	2.10E−02	−2.82	3.30E−04	ABC transporter G family member
Sopen04g005380	3.19	2.80E−08	2.8	6.50E−04	ABC transporter G family member
Sopen12g034820	4.37	2.10E−12	3.47	4.00E−06	Pleiotropic drug resistance protein1-like (ABC transporter G family)
Sopen03g001870	4.52	1.10E−32	4	3.60E−09	ABC transporter B family member
Central carbon metabolism
Sopen07g006810	5.01	6.70E−12	3.63	4.30E−04	RUBISCO small subunit
Sopen08g020180	2.11	1.90E−10	2.18	2.30E−07	NADP-dependent malic enzyme
Sopen12g026980	2.72	1.80E−09	1.21	3.40E−04	Glutathione S-transferase
Sopen01g042050	3.39	1.30E−09	2.76	3.10E−06	Sugar transporter ERD6-like
Selected transcription factors
Sopen05g008450a	4.9	1.3E−21	4.15	6.3E−10	AP2 domain
Sopen12g021250a	3.9	4.4E−15	2.88	5.6E−06	AP2 domain
Sopen03g036630a	3.13	1.5E−12	2.71	3.8E−07	AP2 domain
Sopen10g031080a	2.68	5.5E−12	2.53	3E−07	Homeobox associated leucine zipper
Sopen06g024660a	2.88	1.9E−09	4.02	9.8E−11	Myb-like DNA-binding domain
Sopen08g028640a	3.54	1.5E−07	3.57	3.6E−08	AP2 domain
Sopen02g021600a	1.79	5.6E−05	2.07	6.4E−05	Myb-like DNA-binding domain
Sopen01g037680a	1.8	9E−04	1.39	2.1E−02	TCP family transcription factor
Sopen03g037210a	1.65	1.1E−03	2.62	9.7E−05	Helix–loop–helix DNA-binding domain

Log₂FC indicates log₂ (fold-change). Positive and negative log₂FC values indicate higher and lower expression levels, respectively, in high-acylsugar–producing accessions. 2.00E−02 = 2.00 × 10⁻⁰².

^aTranscription factor genes were selected based on their response to imazapyr treatment (see Table 5).