Table 2.
Genomic features of cis-miR-eQTMs.
| Genomic Features | cis-miR-eQTMs | Total CpGs | Fold Change | P value |
|---|---|---|---|---|
| CpG Island | 82 | 150,254 | 1.06 | 0.49 |
| Low-CpG region | 6 | 4954 | 2.34 | 0.03 |
| High-CpG region | 15 | 27,104 | 1.08 | 0.76 |
| Enhancer | 45 | 102,559 | 0.85 | 0.23 |
| Enhancer (Encode gm12878) | 12 | 23,988 | 1.99 | 0.01 |
| Promoter | 71 | 98,090 | 1.41 | 9.7E-4 |
| Promoter (Encode gm12878) | 44 | 71,180 | 2.46 | 1.49E-11 |
| Heterochrom/lo (Encode gm12878) | 30 | 79,312 | 1.51 | 0.01 |
| Insulator (Encode gm12878) | 4 | 4008 | NA | NA |
| Repetitive/CNV (Encode gm12878) | 1 | 674 | NA | NA |
| Repressed (Encode gm12878) | 22 | 24,355 | 3.60 | 3.89E-11 |
* The significant terms were defined as Fold change > 1 and Bonferroni corrected P < 0.05/11.
* CpG annotation were from Illumina annotation platform and Encode ChromHMM Track of gm12878 cell line.