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. Author manuscript; available in PMC: 2021 Feb 15.
Published in final edited form as: Biosens Bioelectron. 2019 Dec 10;150:111959. doi: 10.1016/j.bios.2019.111959

Table. 1.

Nucleic acids for the synthesis of RGD-null ITS that reports their DNA resistance to DNases. (Sequences are from 5‵ end to 3‵ end)

1 DNA upper strand for RGD-null ITS GGG CGG CGA CCT CAG CAT/3BHQ_2/
2 DNA lower strand for RGD-null ITS /5BiosG/T/iCy3/ATG CTG AGG TCG CCG CCC/
3 RNA upper strand for RGD-null ITS mG*mG*mG* mC*mG*mG* mC*mG*mA* mC*mC*mU* mC*mA*mG* mC*mA*mU*/3BHQ_2/
4 RNA lower strand for RGD-null ITS /5BiosG/mU*/iCy3/mA*mU*mG* mC*mU*mG* mA*mG*mG* mU*mC*mG* mC*mC*mG* mC*mC*mC*/
5 PNA lower strand for RGD-null ITS Biotin-OO-Lys(Cy3)-O-ATGCTGAGGTCGCCGCCC

Notes:

1.

Strands 1 and 2 were hybridized to dsDNA-based RGD-null ITS.

2.

Strands 3 and 4 were hybridized to dsRNA-based RGD-null ITS.

3.

Strands 1 and 5 were hybridized to PNA/DNA-based RGD-null ITS.

4.

Strands 3 and 5 were hybridized to PNA/RNA-based RGD-null ITS.

5.

/3BHQ_2/ represents a Black Hole Quencher 2 at the 3’ end.

6.

/5BiosG/ represent a biotin tag at the 5’ end of a nucleic acid.

7.

m_* in strands 5 and 6 represents a phosphorothioated 2’O-methyl base.

8.

“O” in the PNA sequence represents an ethylene glycol that increases the PNA solubility in water.