Table. 1.
Nucleic acids for the synthesis of RGD-null ITS that reports their DNA resistance to DNases. (Sequences are from 5‵ end to 3‵ end)
1 | DNA upper strand for RGD-null ITS | GGG CGG CGA CCT CAG CAT/3BHQ_2/ |
2 | DNA lower strand for RGD-null ITS | /5BiosG/T/iCy3/ATG CTG AGG TCG CCG CCC/ |
3 | RNA upper strand for RGD-null ITS | mG*mG*mG* mC*mG*mG* mC*mG*mA* mC*mC*mU* mC*mA*mG* mC*mA*mU*/3BHQ_2/ |
4 | RNA lower strand for RGD-null ITS | /5BiosG/mU*/iCy3/mA*mU*mG* mC*mU*mG* mA*mG*mG* mU*mC*mG* mC*mC*mG* mC*mC*mC*/ |
5 | PNA lower strand for RGD-null ITS | Biotin-OO-Lys(Cy3)-O-ATGCTGAGGTCGCCGCCC |
Notes:
Strands 1 and 2 were hybridized to dsDNA-based RGD-null ITS.
Strands 3 and 4 were hybridized to dsRNA-based RGD-null ITS.
Strands 1 and 5 were hybridized to PNA/DNA-based RGD-null ITS.
Strands 3 and 5 were hybridized to PNA/RNA-based RGD-null ITS.
/3BHQ_2/ represents a Black Hole Quencher 2 at the 3’ end.
/5BiosG/ represent a biotin tag at the 5’ end of a nucleic acid.
m_* in strands 5 and 6 represents a phosphorothioated 2’O-methyl base.
“O” in the PNA sequence represents an ethylene glycol that increases the PNA solubility in water.