Table. 2.
1 | DNA upper strand for ITS | /5ThioMC6-D/GGG CGG CGA CCT CAG CAT/3BHQ_2/ |
2 | DNA upper strand for ITS (Linked with RGD) | /RGD/GGG CGG CGA CCT CAG CAT/3BHQ_2/ |
3 | DNA lower strand for ITS | /5Cy3/ATG CTG AGG TCG CCG CCC/3Bio/ |
4 | RNA upper strand for ITS | /5ThioMC6-D/ mG*mG*mG* mC*mG*mG* mC*mG*mA* mC*mC*mU* mC*mA*mG* mC*mA*mU*/3BHQ_2/ |
5 | RNA upper strand for ITS (Linked with RGD) | /RGD/ mG*mG*mG* mC*mG*mG* mC*mG*mA* mC*mC*mU* mC*mA*mG* mC*mA*mU*/3BHQ_2/ |
6 | RNA lower strand | /5Cy5/mA*mU*mG* mC*mU*mG* mA*mG*mG* mU*mC*mG* mC*mC*mG* mC*mC*mC*/3Bio/ |
7 | PNA lower strand | Cy3-O-ATGCTGAGGTCGCCGCCC-KKKK(Biotin) |
Notes:
/5ThioMC6-D/ represents a thiol modification which is used to conjugate a RGD peptide to a DNA or a RNA. Protocol of conjugating RGD to DNA strand 1 or RNA strand 6 can be found in (Zhao et al., 2019).
/3Bio/ represent a biotin tag at the 3’ end of a nucleic acid.
“K” in the PNA sequence represents a lysine that increases the PNA solubility in water.
Strands 2 and 3 were hybridized to dsDNA-based RGD ITS.
Strands 5 and 6 were hybridized to dsRNA-based RGD ITS.
Strands 2 and 7 were hybridized to PNA/DNA-based RGD ITS.
Strands 5 and 7 were hybridized to PNA/RNA-based RGD ITS.