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. Author manuscript; available in PMC: 2021 Feb 15.
Published in final edited form as: Biosens Bioelectron. 2019 Dec 10;150:111959. doi: 10.1016/j.bios.2019.111959

Table. 2.

Nucleic acids for the synthesis of ITS reporting cellular forces. (Sequences are from 5‵ end to 3‵ end)

1 DNA upper strand for ITS /5ThioMC6-D/GGG CGG CGA CCT CAG CAT/3BHQ_2/
2 DNA upper strand for ITS (Linked with RGD) /RGD/GGG CGG CGA CCT CAG CAT/3BHQ_2/
3 DNA lower strand for ITS /5Cy3/ATG CTG AGG TCG CCG CCC/3Bio/
4 RNA upper strand for ITS /5ThioMC6-D/ mG*mG*mG* mC*mG*mG* mC*mG*mA* mC*mC*mU* mC*mA*mG* mC*mA*mU*/3BHQ_2/
5 RNA upper strand for ITS (Linked with RGD) /RGD/ mG*mG*mG* mC*mG*mG* mC*mG*mA* mC*mC*mU* mC*mA*mG* mC*mA*mU*/3BHQ_2/
6 RNA lower strand /5Cy5/mA*mU*mG* mC*mU*mG* mA*mG*mG* mU*mC*mG* mC*mC*mG* mC*mC*mC*/3Bio/
7 PNA lower strand Cy3-O-ATGCTGAGGTCGCCGCCC-KKKK(Biotin)

Notes:

1.

/5ThioMC6-D/ represents a thiol modification which is used to conjugate a RGD peptide to a DNA or a RNA. Protocol of conjugating RGD to DNA strand 1 or RNA strand 6 can be found in (Zhao et al., 2019).

2.

/3Bio/ represent a biotin tag at the 3’ end of a nucleic acid.

3.

“K” in the PNA sequence represents a lysine that increases the PNA solubility in water.

4.

Strands 2 and 3 were hybridized to dsDNA-based RGD ITS.

5.

Strands 5 and 6 were hybridized to dsRNA-based RGD ITS.

6.

Strands 2 and 7 were hybridized to PNA/DNA-based RGD ITS.

7.

Strands 5 and 7 were hybridized to PNA/RNA-based RGD ITS.