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. 2020 Jan 9;10:3076. doi: 10.3389/fmicb.2019.03076

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Copyright © 2020 Lee, Teng, DiLorenzo, Weppelmann and Jeong.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Profile of virulence factors in representative isolates Virulence factors (VFs) in the 34 representative isolates, selected by the similarity of genome structure, source of farms, and sample types, were identified using VFDB. Protein sequences of the representative isolates (query sequences) were aligned to the reference sequences (subject sequences) in VFDB using BLASTp, and only the proteins that indicated query and subject coverage higher than 50% were included in the figure. Depending on the function of each VF, VFs were classified, and gradation color indicates the identity of VFs compared to the reference sequences. The listed numbers at the bottom indicate the number of identified VFs in each isolate.