Table 2.
Comparison of previously known Ridom types and novel spa types in S. aureus samples.
| samples/ Ridom type |
repeat sequence |
repeat units |
length | spa repeat sequence | spa repeat sequence |
|---|---|---|---|---|---|
| gh2 | 41 | 7 | 168 | T1:M1:B1:B1:M1:E1:* | r26:r17:r34:r34:r17:r13:r314 |
| gh22 | 31 | 7 | 168 | T1:M1:B1:B1:M1:E1:K1 | r26:r17:r34:r34:r17:r13:r16 |
| gh11 | 41 | 8 | 192 | U1:G2:M1:F1:*:B1:L1:B1 | r07:r06:r17:r21:r81:r34:r22:r34 |
| gh19 | 41 | 7 | 168 | T1:M1:B1:B1:M1:E1:* | r26:r17:r34:r34:r17:r13:r314 |
| gh20 | 44 | 6 | 144 | U1:J1:G1:F1:*:* | r07:r23:r12:r21:r298:r254 |
| gh21 | 47 | 10 | 240 | T1:M1:B1:B1:*:*:*:*:*:* | r26:r17:r34:r34:r298:r377:r298:r298:r298:r314 |
| gh5-t2460 | 25 | 10 | 240 | T1:M1:B1:B1:M1:D1:M1:M1:M1:K1 | r26:r17:r34:r34:r17:r20:r17:r17:r17:r16 |
| gh7-t338 | 42 | 7 | 168 | W1:F1:K1:A1:O1:M1:Q1 | r15:r21:r16:r02:r25:r17:r24 |
| gh27-t2460 | 35 | 10 | 240 | T1:M1:B1:B1:M1:D1:M1:M1:M1:K1 | r26:r17:r34:r34:r17:r20:r17:r17:r17:r16 |
| gh97-t324 | 45 | 10 | 240 | U1:J1:G1:G1:M1:D1:M1:G1:G1:M1 | r07:r23:r12:r12:r17:r20:r17:r12:r12:r17 |
| gh100-t693 | 48 | 1 | 24 | U1 | r07 |
* Ridom is spaserver.ridom.de, CLUSTAL 2.1 is multiple sequence alignment, gh is Gil Hospital, ND is not determined.