Table 2.
RDP 4.36 software recombination analysis of the avian gyrovirus 2 (AGV2) genome.
| Recombination Event | No. | Recombinant Sequence | Breakpoint Positions | Major Parent | Minor Parent | p-Value | |||
|---|---|---|---|---|---|---|---|---|---|
| Begin End | Similarity | Similarity | |||||||
| 1 | 7 | HB2018S1 | 100 | 1542 | HLJ1603-2 | 99% | G13 | 99.5% | 2.71 × 10−11 |
| 2 | 1 | HLJ1506-1 | 1948 | 2556 | GZ1601 | 99.3% | G17 | 99.8% | 4.50 × 10−7 |
| 3 | 1 | GZ1601 | 1110 | 1542 | JL1511 | 97.3% | S53-It | 100% | 3.38 × 10−6 |
| 4 | 3 | JL1511 | 52 | 639 | JQ690763.1 | 98.8% | G13 | 99.3% | 1.89 × 10−4 |
Recombination event 1: NX1510; NX1506-2; NX1506-1; JL1508; JX1602; LN1511. Recombination event 4: HLJ1508; RS-BR-2015. Minor parent = parent contributing the smaller fraction of sequence. Major parent = parent contributing the larger fraction of sequence. p-value: p-value of the RDP method.