ACME	Arginine Catabolic Mobile Element
COGs	Clusters of Orthologous Groups
CRISPR	Clustered Regularly Interspaced Short Palindromic Repeat
PGAP	Prokaryotic Genome Annotation Pipeline
RAST	Rapid Annotation using Subsystem Technology
R-M System	Restriction-Modification System
MSCRAMMs	Microbial Surface Components Recognizing Adhesive Matrix Molecules
MDR	Multi Drug Resistance
MRSA	Methicillin Resistance Staphylococcus aureus
SCC	Staphylococcal Cassette Chromosome
MLST	Multilocus Sequence Typing
CC	Clonal Complexes