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. 2020 Jan 6;16(1):e1007593. doi: 10.1371/journal.pcbi.1007593

Table 1. Overview of user inputs for the three simulated scenarios.

User inputs Scenario 1 Scenario 2 Scenario 3
Candidate model space RW RW, KRW RW(V), RWPH(V), RWPH(α), RWPH(V + α)
Analysis procedure Maximum likelihood parameter estimation Model selection using BIC Model selection using BIC
Utility function Absolute error of learning rate (α) estimate Model selection accuracy Model selection accuracy
Analysis prior Uniform over α Uniform over models and parameters Uniform over models and parameters
Reference design Acquisition followed by extinction of equal length Backward blocking Reversal learning
Evaluation prior Point priors on low, middle and high α (LA, MA, HA) Uniform over models with point priors on parameters (from [39]) Uniform over models with point priors on parameters (from [31])
Optimized experiment structure One cue with periodically varying contingency Two stages with three cues (A, B, AB) and stage-wise contingencies Two stages with two cues (A, B) and stage-wise contingencies
Design space Two contingencies (P1, P2) and the period (T) of their switching (3 variables) For each stage s and cue X: Ps(X), Ps(US|X) (10 non-redundant variables) For each stage s and cue X: Ps(X), Ps(US|X) (6 non-redundant variables)
Design priors Either a point prior over α coinciding with evaluation prior (PA) or a vague prior (VA) Uniform over models with either a point (PP) or vague (VP) prior over parameters Uniform over models with either a point (PP) or vague (VP) prior over parameters

The role of user inputs is clarified by Fig 1. See the Methods section for details. Analysis priors are used in fitting models, design priors are used to simulate data when optimizing designs, and evaluation priors are used to simulate data when evaluating both reference and optimized designs.