Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Strain, strain background (HHV-6A) |
GS | NIH AIDS | ||
| Strain, strain background (HHV-6B) |
Z29 | NIH AIDS | ||
| Cell line (Homo-sapiens) |
HSB-2 | NIH AIDS, Electro-Nucleonics, Inc (Barre-Sinoussi et al., 1983) |
||
| Cell line (Homo-sapiens) | Molt-3 | NIH AIDS | ATCC CRL1552 | |
| Sequence-based reagent | lncRNA3-6A F | This paper | qPCR primers | AAAAGGACAAGAGCAGCCGC |
| Sequence-based reagent | lncRNA3-6A R | This paper | qPCR primers | ACTCGTATCACCTACCTCTCTCTAC |
| Sequence-based reagent | lncRNA3-6A F | This paper | qPCR primers | GGTATCGGGGTAAGAATAAGATGACG |
| Sequence-based reagent | lncRNA3-6A R | This paper | qPCR primers | AAAAGGACAAGAGCAGCCGC |
| Sequence-based reagent | lncRNA2-6B F | This paper | qPCR primers | CAAAACGGTCTCACTGCTCC |
| Sequence-based reagent | lncRNA2-6B R | This paper | qPCR primers | TCTATAAAGTGCCGTGAGTGC |
| Sequence-based reagent | lncRNA2-6A F | This paper | qPCR primers | CGACAAAACAAAATAGTCCCACT |
| Sequence-based reagent | lncRNA2-6A R | This paper | qPCR primers | ATGGAAAAGGTGGTCGTGGA |
| Sequence-based reagent | U21-6B F | This paper | qPCR primers | CCGCACCCATGAACATAAGG |
| Sequence-based reagent | U21-6B R | This paper | qPCR primers | ATGATGTGACGTGGGGACTT |
| Sequence-based reagent | U21-6A F | This paper | qPCR primers | CCAGCCACCTAGAGAACGAA |
| Sequence-based reagent | U21-6A R | This paper | qPCR primers | TTGGGCTGAACTCTCGACAT |
| Sequence-based reagent | 18 S F | This paper | qPCR primers | CTCAACACGGGAAACCTCAC |
| Sequence-based reagent | 18 S R | This paper | qPCR primers | CGCTCCACCAACTAAGAACG |
| Sequence-based reagent | probe 1 F | This paper | Northern blot probe template primers |
GTAAGATTTAACCTATTTTGCAT |
| Sequence-based reagent | probe 1 R | This paper | Northern blot probe template primers |
TAATACGACTCACTATAGGGTGA TGACAATATAGAAGATGG |
| Sequence-based reagent | probe 2 F | This paper | Northern blot probe template primers |
GAAAAGTCATCAGAAAAGTCATCAGAA |
| Sequence-based reagent | probe 2 R | This paper | Northern blot probe template primers |
TAATACGACTCACTATAGGG TCA ACTGTTTTGTGCCCAAC |
| Sequence-based reagent | probe 3 F | This paper | Northern blot probe template primers |
TATTTAGTTCACATTATAAGGACCT |
| Sequence-based reagent | probe 3 R | This paper | Northern blot probe template primers |
TAATACGACTCACTATAGGGCT GCAAAAACAAATGAAAGTCT |
| Software, algorithm | Bowtie v1.1.2 | (Langmead et al., 2009) | ||
| Software, algorithm | Morpheus | https://software.broadinstitute.org/morpheus | ||
| Software, algorithm | TopHat v2.1.1 | (Kim et al., 2013; Trapnell et al., 2009) | ||
| Software, algorithm | STAR v2.5.3a | (Dobin et al., 2013) | ||
| Software, algorithm | R 3.6.0 | (R Development Core Team, 2019; Wickham, 2016) |