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. 2020 Jan 13;6(1):34–45. doi: 10.1038/s41477-019-0577-7

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — a, Circos plot of the multidimensional topography for B. napus ZS11 genome. A–H, Concentric circles from outermost to innermost, show GC content (A), gene density (B), TE density (C), A/B compartment (D), SNP density in No2127 (E), SNP density in Tapidor (F), SNP density in Shengli (G) and syntenic regions between the A and C subgenomes (H). b, Genome-wide contact matrix of ZS11 genome. The colour intensity represents the frequency of contact between two 500 kb loci. c, Interaction frequency, A/B compartment and gene density in ZS11 chromosome A01. The colour scale represents the Pearson’s correlation coefficient of normalized interaction matrix. Eigv, eigenvector value of correlation matrix.