Table 2.
Mutations detected in 77 gastric tumours by Ion AmpliSeq Cancer Hotspot Panel v2.
| Gene | Genetic variant | rsID | Variant position according to hg19 | Pathogenicity (ClinVar) | MAF (gnomAD) | Number of cases |
|---|---|---|---|---|---|---|
| PIK3CA |
c.1633G > A: p.E545K |
rs104886003 | chr3:178936091 | Pathogenic | A = 0.000004 | 1 |
| PIK3CA |
c.3140 A > G: p.H1047R |
rs121913279 | chr3:178952085 | Pathogenic | G = 0.000004 | 1 |
| EGFR |
c.874 G > A: p.V292M |
rs150549265 | chr7:55221830 | — | A = 0.000004 | 1 |
| KIT |
NM_000222.2: c.G148T: p.V50L |
rs200950545 | chr4:55561758 | Uncertain significance | T = 0.000033 | 1 |
| KDR |
NM_002253: c.G2678C: p.G893A |
— | chr4:55962446 | — | — | 1 |
| RB1 |
c.2056 C > A: p.H686N |
— | chr13:49033919 | — | — | 1 |
| RB1 |
c.2002C > T: p.R668C |
rs369755801 | chr13:49033865 | — | T = 0.000028 | 1 |
| RB1 |
c.1690C > T: p.L564F |
— | chr13:48955574 | — | — | 1 |
| CDKN2A |
c.307 C > T: p.R103W |
rs767642535 | chr9:21971051 | Uncertain significance | A = 0.000004 | 1 |
| SMO |
c.618 G > A: p.W206* |
rs751636409 | chr7:128845124 | — | A = 0.000008 | 1 |
| KRAS |
NM_0.004985.4: c.35 G > A: p.G12D |
rs121913529 | chr12:25398284 | Pathogenic | A = 0.000004 | 1 |