Table 1.
Details of PCR and restriction enzyme digestion
Polymorphism | Primers | Annealing temperature (°C) | Restriction enzyme | Genotype and band sizes |
---|---|---|---|---|
MTHFR C677T | Forward: 5’-TGA AGG AGA ACG TGT CTG CGG GA-3’ | 59 | HinfI | TT (175, 23 bp) |
Reverse: 5’-AGG ACG GTG CGG TGA GAG TG-3’ | TC (198, 175, 23 bp) | |||
CC (198 bp) | ||||
MTHFR A1298C | Forward: 5’-CTT TGG GGA GCT GAA GGA CTA CTA C-3’ | 62 | MboII | AA (56, 31, 30, 28, 18 bp) |
Reverse: 5’-CAC TTT GTG ACC ATT CCG GTT TG-3’ | AC (84, 56, 31, 30, 18 bp) | |||
CC (84, 31, 30, 18 bp) | ||||
NFKB1 -94ins/del ATTG | Forward: 5’-TGG GCA CAA GTC GTT TAT GA-3’ | 60 | Van91I | II (240, 45 bp) |
Reverse: 5’-CTG GAG CCG GTA GGG AAG-3’ | ID (281, 240, 45 bp) | |||
DD (281 bp) | ||||
NFKBIA 3’UTR A>G | Forward: 5’-GGC TGA AAG AAC ATG GAC-3’ | 58 | HaeIII | AA (424 bp) |
Reverse: 5’-GTA CAC CAT TTA CAG GGA GGG-3’ | AG (424, 316, 108 bp) | |||
GG (316, 108 bp) | ||||
DAZL A386G (T54A) | Forward: 5’-GAA TGC TGA ATT TTT ACT CTT GAA G-3’ | 62 | AluI | TT (115, 66 bp) |
Reverse: 5’-CTC TAT ACG TGG CTA GAG TTC-3’ | TA (115, 66, 53 and 13 bp) | |||
AA (115, 53 and 13 bp) | ||||
CYP1A1 T3801C | Forward: 5’-TAG GAG TCT TGT CTC ATG CCT-3’ | 58 | MspI | TT (340 bp) |
Reverse: 5’-AGC GGC TAC ACC TCT TCA CTG 3’ | TC (340, 200, 140 bp) | |||
CC (200, 140 bp) |