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. 2020 Jan 10;10:2934. doi: 10.3389/fmicb.2019.02934

TABLE 1.

Characteristics of CRISPR-Cas positive plasmids.

Sl no. Plasmid Speciesa Accession no. CRISPR-array position DR-length (bp) No. of spacers Plasmid size (kb) Replicon typeb Antibiotic resistance genes identified (annotation by ResFinderc)
1 pKPM501 Kp CP031735.1 200609–201185 28 9 253 IncFIBk, IncFIIk blaCTX–M–15, blaTEM–1A, aac(6′)-Ib, aac(6′)-Ib-cr, dfrA14
2 unnamed_1 Kp CP022612.1 313185–313943 29 12 335 IncHI1, IncHI1B, IncFIB, IncR blaNDM–1, blaCTX–M–15, blaTEM–1A, blaOXA–9, blaSHV–13, aph(3′)-VI, armA, aadA2, aadA1, aac(6′)-Ib, aac(6′)-Ib-cr, aac(3)-IId, aph(6)-Id, sul1,2,3; dfrA12
3 AR_0153 plasmid unnamed1 Kp CP028929.1 62241–63001 29 12 283 IncHI1B, IncFIB blaNDM–1, blaOXA–1, aph(3′)-VI, armA, aadA2, aac(6′)-Ib-cr, qnrB1, sul1, dfrA12, dfrA14
4 pKPN528-1 Kp CP020854.1 251737–252495 29 12 292 IncHI1B, IncFIB blaNDM–1, blaOXA–1, aph(3′)-VI, armA, aadA2, aac(6′)-Ib-cr, qnrB1, sul1, dfrA12, dfrA14
5 AR_0068 plasmid unitig_1 Kp CP020068.1 136244–137004 29 12 276 IncHI1B, IncFIB blaNDM–1, blaSHV–13, aph(3′)-VI, armA, aadA2, aac(3)-IId, aph(6)-Id, sul1,2; dfrA12
6 pIncHI1B_DHQP1300920 Kp CP016921.1 229597–230357 29 12 283 IncHI1B, IncFIB blaNDM–1, blaOXA–1, aph(3′)-VI, armA, aadA2, aac(6′)-Ib-cr, qnrB1, sul1, dfrA12, dfrA14
7 KP617 plasmid KP-plasmid1 Kp CP012754.1 114404–115164 29 12 273 IncHI1B, IncFIB blaNDM–1, aph(3′)-VI, armA, aadA2, qnrB1, sul1, dfrA12
8 PittNDM01 plasmid1 Kp CP006799.1 114132–114892 29 12 283 IncHI1B, IncFIB blaNDM–1, blaOXA–1, aph(3′)-VI, armA, aadA2, aac(6′)-Ib-cr, qnrB1, sul1, dfrA12, dfrA14
9 pKJNM10C3.2 Kp CP030878.1 136256–137016 29 12 276 IncHI1B, IncFIB blaNDM–7, aph(3′)-VI, armA, aadA2, aph(3′′)-Ib, aph(6)-Id, aac(3)-IIa, sul1, 2; dfrA12
10 p18ES-342 Kp CM008881 52979–53610 23 10 332 IncHI1B, IncFIB dfrA1
11 unnamed1 Kp CP031818 223392–224022 23 10 430 IncFIB None
12 pKpvST147L Kp CM007852 167552–168555 29 16 343 IncHI1B, IncFIB armA, aph(3′)-Ia, sul1, 2; dfrA5
13 KSB2_1B plasmid unnamed1 Kp CP024507.1 41987–42747 29 12 310 IncFIB None
14 pKp_Goe_414-1 Kp CP018339.1 75291–76111 29 13 204 IncFIB None
15 pKPN-3967 Kp CP026186.1 221215–221302 27 1 373 IncFIB None
16 p44-1 Kp CP025462.1 42604–43120 29 8 261 IncFIB None
17 TVGHCRE225 plasmid unnamed1 Kp CP023723.1 10881–11763 29 14 297 IncHI1B, IncFIB None
18 pOXA1_020030 Kp CP028791.1 30205–30843 29 10 288 IncFIB blaOXA–1, aac(6′)-Ib-cr, sul1
19 825795-1 plasmid unnamed1 Kp CP017986.1 148524–149585 30 17 244 IncHI1B, IncFIB None
20 pKp_Goe_304-1 Kp CP018720.1 24563–25679 24 18 246 IncHI1B, IncFIB None
21 pKp_Goe_021-1 Kp CP018714.1 7697–8748 30 17 246 IncHI1B, IncFIB None
22 pKp_Goe_026-1 Kp CP018708.1 54661–55777 24 18 246 IncHI1B, IncFIB None
23 pKp_Goe_024-1 Kp CP018702.1 5006–6122 24 18 246 IncHI1B, IncFIB None
24 pKp_Goe_832-1 Kp CP018696.1 102143–103259 24 18 246 IncHI1B, IncFIB None
25 pKp_Goe_473-1 Kp CP018687.1 116666–117727 30 17 246 IncHI1B, IncFIB None
26 pKp_Goe_579-1 Kp CP018313.1 94773–95834 30 17 246 IncHI1B, IncFIB None
27 AR_0363 plasmid unnamed4 Kp CP027156.1 127062–128305 29 20 186 IncHI1B, IncFIB aac(6′)-Ib, aac(6′)-Ib-cr
28 pKPN-edaa Kp CP026398.1 7401–8525 29 18 249 IncHI1B, IncFIB blaNDM–1, blaOXA–1, blaDHA–1, aph(3′′)-Ib, aph(6)-Id, aac(6′)-Ib-cr, qnrB4, sul1
29 pKPN-bbef Kp CP026172.1 227283–228407 29 18 244 IncHI1B, IncFIB None
30 pKpvST101_5 Kp CP031372.1 144828–145262 25 10 210 IncHI1B, IncFIB None
31 pKpn23412-362 Kp CP011314.1 141865–142618 23 12 362 IncHI1B, IncFIB blaOXA–1, blaCTX–M–15, blaTEM–1B, blaOXA–1, aac(3)-IIa, aph(3′′)-Ib, aph(6)-Id, aac(6′)-Ib-cr, sul2, dfr1
32 p1502320-3 Kp CP031580.1 7608–8781 29 19 87 ND None
33 pKP3301 DNA Kp AP018748.1 3677–4373 29 11 296 IncHI1B, IncFIB blaNDM–1, blaCTX–M–15, blaTEM–1A, blaOXA–1, aph(3′)-VI, armA, aadA2, aac(6′)-Ib, aac(6′)-Ib-cr
34 SKGH01 plasmid unnamed 1 Kp CP015501.1 7545–7875 29 15 281 IncHI1B, IncFIB None
35 Plasmid_A_Kpneumoniae_MS6671 Kp LN824134.1 16764–17823 29 17 280 IncHI1B, IncFIB None
36 pKJNM8C2.1 Kp CP030858.1 10639–11155 30 8 304 IncHI1B, IncFIB blaNDM–1, blaCTX–M–15, blaOXA–1, armA, aadA2, aac(6′)-Ib-cr, qnrB1, sul1, dfrA12
37 pPMK1-NDM Kp CP008933.1 10628–11144 30 8 304 IncHI1B, IncFIB blaNDM–1, blaCTX–M–15, blaOXA–1, armA, aadA2, aac(6′)-Ib-cr, qnrB1, sul1, dfrA12
38 pFB2.1 Pg CP014776.1 56849–57852 29 16 242 IncFIB None
39 pE20-HI3 Kp MG288682.1 27978–29043 29 17 240 IncFIB blaOXA–1, armA, aac(6′)-Ib-cr, sul1
40 pEC422_1 Ec CP018961.1 276922–277868 29 15 290 IncHI1B, IncFIB blaCTX–M–2, blaTEM–1B, blaOXA–1, aac(6′)-Ib-cr, aac(3)-IIa, sul1
41 pNDM-TJ03 Kp MG845201.1 130378–131435 29 17 280 IncHI1B, IncFIB blaNDM–1, blaOXA–1, blaSHV–12, blaDHA–1, aph(3′′)-Ib, aph(6)-Id, aac(6′)-Ib-cr, qnrB4, sul1
42 pNDM-TJ11 Ko MG845200.1 130294–131351 29 17 275 IncHI1B, IncFIB blaNDM–1, blaOXA–1, blaDHA–1, aph(3′′)-Ib, aph(6)-Id, aac(6′)-Ib-cr, qnrB4, sul1
43 pENVA Kp HG918041.1 99454–100629 23 19 254 IncHI1B, IncFIB blaNDM–1, blaOXA–1, blaSHV–12, blaDHA–1, aph(3′′)-Ib, aph(6)-Id, aac(6′)-Ib-cr, qnrB4, sul1
44 pKP64477b Kp MF150122.1 84064–85428 29 22 205 IncHI1B, IncFIB None
45 Raoultella ornithinolytica strain 18 plasmid 1 Ro CP012556.1 115417–115897 29 7 216 ND None
46 pKPN1481-1 Kv CP020848.1 325794–326308 29 8 347 IncHI1B, IncFIB blaNDM–1, blaCTX–M–15, blaOXA–1, blaTEM–1A, blaOXA–9, aac(6′)-Ib, aac(6′)-Ib-cr, aadA1, qnrB1
47 pK66-45-1 Kp CP020902.1 None 0 0 338 IncFIB, IncFII, IncHI1B, IncR blaNDM–1, blaCTX–M–15, armA, aadA2, aph(3′)-VI, qnrS1, sul1, dfrA12

aKp, K. pneumoniae; Pg, Pluralibacter gergoviae; Ec, E. coli; Ko, Klebsiella oxytoca; Ro, Raoultella ornithinolytica; Kv, Klebsiella variicola.bND, not detected.caac(6′)-Ib also commonly annotated as aacA4; aph(3′′)-Ib, aph(6)-Id also commonly annotated as strA, strB.