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. 2020 Jan 10;10:2999. doi: 10.3389/fmicb.2019.02999

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Copyright © 2020 Eberl, Ring, Münch, Beutler, Basic, Slack, Schwarzer, Srutkova, Lange, Frick, Bleich and Stecher.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Colonization dynamics of OMM¹² mice in four different germ-free facilities after single-dose inoculation: absolute abundance of individual OMM¹² strains. Absolute abundance of each strain was determined using a strain-specific qPCR assay for the experiment described in Figure 3, Data are plotted as 16S rRNA gene copy numbers of the individual strains per μl of extracted gDNA: (A) Lactobacillus reuteri I49, (B) Enterococcus faecalis KB1, (C) Blautia coccoides YL58, (D) Clostridium innocuum I46, (E) Flavonifractor plautii YL31, (F) Clostridium clostridioforme YL32, (G) Acutalibacter muris KB18, (H) Bacteroides caecimuris I48, (I) Muribaculum intestinale YL27, (J) Bifidobacterium longum subsp. animalis YL2, (K) Akkermansia muciniphila YL44, (L) Turicimonas muris YL45. Statistical analysis was performed using Kruskal-Wallis test with Dunn’s multiple comparison test (^∗p < 0.05, ^∗∗p < 0.01, ^∗∗∗p < 0.001). Green points indicate samples collected <20 days post inoculation.